View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_high_17 (Length: 237)
Name: NF15457_high_17
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42768971 - 42769191
Alignment:
| Q |
1 |
taatacacaattaacaagacttaaaactcaaacaacttagtagaaaagtaagtaagtattcttacgcatcatctgaagatgcacgatcagctttggcatc |
100 |
Q |
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| T |
42768971 |
taatatacaattaacaaaacttaaaactcaaacaacttagtagaaaagtaagtaagtattcttacgcatcatctgaagatgcacgatcagctttggcatc |
42769070 |
T |
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| Q |
101 |
aactgcacttattaatgggtagaacttatgaggtggcaagtgggactctgaaaggctagctccctatcaattaaaagaatgagaatgatgtaatgatatt |
200 |
Q |
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| T |
42769071 |
aactgcacttattaatgggtagaacttatgaggtggcaagtgggactctgaaaggctagctccctatcaattaaaagaatgagaatgatgtaatgatatt |
42769170 |
T |
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| Q |
201 |
tgatttgatgtatggtttaag |
221 |
Q |
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| T |
42769171 |
tgatttgatgtatggtttaag |
42769191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 176
Target Start/End: Original strand, 42762127 - 42762245
Alignment:
| Q |
58 |
attcttacgcatcatctgaagatgcacgatcagctttggcatcaactgcacttattaatgggtagaacttatgaggtggcaagtgggactctgaaaggct |
157 |
Q |
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||||||||||||| |||| ||| || ||||| |||| ||||| | |||||||| |||||||| |||||||||||||| || | |||||||||||| |
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| T |
42762127 |
attcttacgcatcctctgcagacacatgatcaaatttgacatcagcagcacttatcaatgggtacaacttatgaggtggtaattcaagctctgaaaggct |
42762226 |
T |
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| Q |
158 |
agctccctatcaattaaaa |
176 |
Q |
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| T |
42762227 |
agctccctaacaataaaaa |
42762245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 42735389 - 42735329
Alignment:
| Q |
106 |
cacttattaatgggtagaacttatgaggtggcaagtgggactctgaaaggctagctcccta |
166 |
Q |
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| T |
42735389 |
cacttatcaatggaaacaacttatgaggtggtaagtgagactctgaaaggctagctcccta |
42735329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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