View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_high_7 (Length: 389)
Name: NF15457_high_7
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 377
Target Start/End: Original strand, 38120279 - 38120638
Alignment:
| Q |
19 |
cttcctcctattaaatacctttcaaaatgtactgatcattaatgtttgcataatcaaacgaatatttagaaggattcattgcacatttatttcacttcag |
118 |
Q |
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| T |
38120279 |
cttcctcccattaaatacctttcaaaatgtactgatcattaacctttgcataatcaaacgaatatttagaaggattcattgcacatttatttcacttcag |
38120378 |
T |
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| Q |
119 |
taaataaattcaaatggactcgttcaatttgacttgttactaaatcatttaacccaaaaattatctctggacttcaaatatcactctagcaacttggaag |
218 |
Q |
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| T |
38120379 |
taaataaattcaaatggactcgttcaatttgacttgttactaaatcatttaacccaaaaattatctctggaccctaaatatcactctagcaacttggaag |
38120478 |
T |
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| Q |
219 |
acaacaagaacgcg-taagcagaaaacatgaattgataaacaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaact |
317 |
Q |
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| T |
38120479 |
acaacaagaacgtgctaagcagaaaatatgaattgataaacaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaact |
38120578 |
T |
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| Q |
318 |
atttaagcaacatagtgtagttggataatagtgtgaattaactacaaattcaaagtttca |
377 |
Q |
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| T |
38120579 |
atttaagcaacatagtgtagttggataatagtgtgaattaactacaaattcaaagtttca |
38120638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 38609533 - 38609505
Alignment:
| Q |
349 |
tgtgaattaactacaaattcaaagtttca |
377 |
Q |
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| T |
38609533 |
tgtgaattaactacaaattcaaagtttca |
38609505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 38794316 - 38794288
Alignment:
| Q |
349 |
tgtgaattaactacaaattcaaagtttca |
377 |
Q |
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| T |
38794316 |
tgtgaattaactacaaattcaaagtttca |
38794288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 257 - 377
Target Start/End: Original strand, 28730100 - 28730215
Alignment:
| Q |
257 |
acaagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacat--agtgtagttggataatagtgtgaa |
354 |
Q |
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| T |
28730100 |
acaagataatctcaagaaaatctgtaaagactaaatccaca-------ttattaacgaactagttaagcaacatagagtatatatggataatagtgtgaa |
28730192 |
T |
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| Q |
355 |
ttaactacaaattcaaagtttca |
377 |
Q |
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| T |
28730193 |
ttaactacaaattcagagtttca |
28730215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 33078768 - 33078696
Alignment:
| Q |
258 |
caagataatgtcaagaaaatctgtaaagactaaatccacaaattgttttattgaagaactatttaagcaacatag |
332 |
Q |
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||||||||| ||||||||| |||||||||||||||| ||||| | |||||| |||||||| | ||||||||||| |
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| T |
33078768 |
caagataatctcaagaaaa-ctgtaaagactaaatcaacaaa-cggtttattaaagaactaataaagcaacatag |
33078696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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