View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15457_low_12 (Length: 316)

Name: NF15457_low_12
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15457_low_12
NF15457_low_12
[»] chr3 (19 HSPs)
chr3 (1-301)||(37359290-37359594)
chr3 (53-128)||(46725658-46725733)
chr3 (49-113)||(40614292-40614356)
chr3 (49-128)||(29612021-29612100)
chr3 (53-127)||(9342683-9342757)
chr3 (49-128)||(20821304-20821383)
chr3 (49-128)||(45757930-45758008)
chr3 (53-128)||(24313552-24313627)
chr3 (70-128)||(48551041-48551099)
chr3 (49-128)||(22853927-22854003)
chr3 (75-128)||(28691976-28692029)
chr3 (49-128)||(54911202-54911280)
chr3 (53-119)||(37388417-37388482)
chr3 (49-117)||(22772872-22772940)
chr3 (49-128)||(3027011-3027090)
chr3 (70-128)||(12140146-12140204)
chr3 (65-107)||(25061992-25062034)
chr3 (55-128)||(12908850-12908923)
chr3 (49-128)||(45584355-45584431)
[»] chr1 (23 HSPs)
chr1 (49-128)||(31807806-31807885)
chr1 (49-128)||(4040894-4040972)
chr1 (49-128)||(31043002-31043080)
chr1 (49-128)||(40053294-40053372)
chr1 (49-128)||(39973893-39973971)
chr1 (70-123)||(51904616-51904669)
chr1 (49-128)||(39807521-39807603)
chr1 (50-113)||(8791467-8791530)
chr1 (49-128)||(27934755-27934834)
chr1 (65-128)||(42573811-42573874)
chr1 (50-128)||(759254-759332)
chr1 (49-118)||(48913-48981)
chr1 (49-128)||(37188555-37188627)
chr1 (50-118)||(290602-290669)
chr1 (53-121)||(32787286-32787354)
chr1 (74-122)||(34833738-34833786)
chr1 (65-128)||(48947205-48947268)
chr1 (54-122)||(1656443-1656511)
chr1 (49-128)||(16113920-16113998)
chr1 (65-128)||(34861254-34861317)
chr1 (59-121)||(24075107-24075169)
chr1 (49-118)||(33791766-33791834)
chr1 (70-118)||(35259093-35259141)
[»] chr4 (27 HSPs)
chr4 (49-122)||(35153258-35153331)
chr4 (49-128)||(38682016-38682095)
chr4 (53-128)||(49622976-49623051)
chr4 (49-128)||(32175434-32175511)
chr4 (49-128)||(3179033-3179112)
chr4 (70-133)||(45743311-45743374)
chr4 (53-128)||(46570555-46570630)
chr4 (70-128)||(40252657-40252715)
chr4 (70-128)||(49951737-49951795)
chr4 (49-118)||(23614627-23614695)
chr4 (48-134)||(10505916-10506005)
chr4 (49-128)||(21687612-21687691)
chr4 (49-128)||(53261559-53261637)
chr4 (70-128)||(40173525-40173583)
chr4 (65-118)||(52650732-52650785)
chr4 (70-118)||(22889271-22889319)
chr4 (70-118)||(22940935-22940983)
chr4 (65-129)||(23136549-23136613)
chr4 (49-128)||(36876084-36876162)
chr4 (53-128)||(53622304-53622379)
chr4 (74-128)||(31262917-31262970)
chr4 (70-128)||(50343883-50343941)
chr4 (73-118)||(47937874-47937919)
chr4 (60-97)||(49421932-49421969)
chr4 (93-133)||(4394904-4394944)
chr4 (74-118)||(18939919-18939963)
chr4 (65-117)||(27963156-27963208)
[»] chr8 (23 HSPs)
chr8 (50-136)||(32271163-32271248)
chr8 (49-128)||(40628994-40629072)
chr8 (53-111)||(14453699-14453757)
chr8 (49-128)||(1445160-1445239)
chr8 (49-128)||(18842282-18842360)
chr8 (49-128)||(38047636-38047715)
chr8 (52-127)||(44220740-44220814)
chr8 (75-128)||(2376780-2376833)
chr8 (65-118)||(12002278-12002331)
chr8 (52-128)||(28382814-28382890)
chr8 (65-129)||(37449540-37449604)
chr8 (49-128)||(1876509-1876587)
chr8 (49-128)||(8349705-8349783)
chr8 (49-128)||(35501094-35501173)
chr8 (49-124)||(41960008-41960083)
chr8 (49-113)||(4278957-4279019)
chr8 (49-118)||(31844244-31844313)
chr8 (74-118)||(43841043-43841087)
chr8 (65-128)||(11533233-11533296)
chr8 (65-128)||(20522945-20523008)
chr8 (93-135)||(30461316-30461358)
chr8 (70-119)||(5218083-5218132)
chr8 (65-128)||(44907219-44907283)
[»] chr6 (11 HSPs)
chr6 (48-128)||(27752647-27752728)
chr6 (49-128)||(29716791-29716870)
chr6 (54-128)||(34552534-34552608)
chr6 (55-123)||(5528051-5528119)
chr6 (49-128)||(23344572-23344651)
chr6 (57-111)||(34552211-34552265)
chr6 (54-107)||(34552354-34552407)
chr6 (49-128)||(3753121-3753200)
chr6 (49-112)||(3769344-3769407)
chr6 (65-118)||(10364754-10364807)
chr6 (75-128)||(13445783-13445836)
[»] chr7 (17 HSPs)
chr7 (49-133)||(25036991-25037075)
chr7 (48-128)||(43492227-43492307)
chr7 (49-118)||(8237961-8238029)
chr7 (57-128)||(38362256-38362327)
chr7 (49-128)||(44452068-44452147)
chr7 (65-128)||(19619993-19620056)
chr7 (49-128)||(31498656-31498734)
chr7 (57-128)||(38988707-38988778)
chr7 (50-128)||(37135459-37135537)
chr7 (76-128)||(41150068-41150120)
chr7 (49-128)||(3267637-3267715)
chr7 (49-144)||(26872811-26872906)
chr7 (49-128)||(34299770-34299848)
chr7 (49-128)||(46716180-46716258)
chr7 (74-128)||(39316344-39316398)
chr7 (49-118)||(24610865-24610933)
chr7 (49-109)||(5691444-5691503)
[»] chr5 (19 HSPs)
chr5 (53-128)||(17774312-17774387)
chr5 (49-111)||(28639570-28639632)
chr5 (49-128)||(25767551-25767630)
chr5 (49-121)||(43000757-43000829)
chr5 (53-128)||(14309118-14309192)
chr5 (65-128)||(41568709-41568772)
chr5 (49-119)||(26686679-26686748)
chr5 (49-119)||(26956410-26956479)
chr5 (49-129)||(12448671-12448750)
chr5 (65-116)||(27325866-27325917)
chr5 (49-128)||(36609158-36609236)
chr5 (70-128)||(26432263-26432321)
chr5 (70-128)||(26453688-26453745)
chr5 (74-128)||(39335671-39335724)
chr5 (75-128)||(34032142-34032195)
chr5 (78-122)||(8200073-8200117)
chr5 (70-118)||(12221448-12221496)
chr5 (70-122)||(22601782-22601834)
chr5 (70-118)||(38594978-38595026)
[»] chr2 (22 HSPs)
chr2 (49-115)||(431660-431726)
chr2 (53-128)||(9049181-9049255)
chr2 (49-128)||(12762898-12762976)
chr2 (70-122)||(37284933-37284985)
chr2 (49-128)||(12848499-12848577)
chr2 (49-122)||(3666465-3666537)
chr2 (74-123)||(8086961-8087010)
chr2 (53-122)||(12205526-12205595)
chr2 (59-128)||(28858105-28858173)
chr2 (70-126)||(30822767-30822823)
chr2 (71-122)||(3191078-3191129)
chr2 (53-128)||(8964393-8964467)
chr2 (49-128)||(24389650-24389728)
chr2 (49-128)||(25626949-25627027)
chr2 (75-118)||(33068595-33068638)
chr2 (71-121)||(40874823-40874874)
chr2 (72-122)||(3191167-3191217)
chr2 (70-128)||(33454969-33455027)
chr2 (49-118)||(11385463-11385532)
chr2 (76-128)||(21277554-21277606)
chr2 (49-121)||(30523011-30523082)
chr2 (48-128)||(37313695-37313774)
[»] scaffold0236 (1 HSPs)
scaffold0236 (74-118)||(19578-19622)
[»] scaffold0010 (1 HSPs)
scaffold0010 (49-128)||(26702-26780)
[»] scaffold0053 (1 HSPs)
scaffold0053 (75-128)||(5763-5816)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 301
Target Start/End: Complemental strand, 37359594 - 37359290
Alignment:
Q  1 ttaagtgtcagcactaattaaagaactttaaatggtaannnnnnngataaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttata 100  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37359594 ttaagtgtcagcactaattaaagaactttaaatggtaatttttttgataaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatg 37359495  T
Q  101 gaataattacttaatttaaaatgcttaagaaatatcggagcacttcttaacgagactctatnnnnnnnnntaaggg------ggaaaagttgattcttat 194  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||         ||||||      ||||||||||||||||||    
T  37359494 gaataattacttaatttaaaatgcttaagaaatatcggggtacttcttaacgagaccctat--aaaaaaataagggggaaaaggaaaagttgattcttat 37359397  T
Q  195 tgcttcatcaatatcaatcaatattattataataaagaacttggacaactattacaataaagaaattggaaaaactatcatggttgacacttggcttgta 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  37359396 tgcttcatcaatatcaatcaatattattataataaagaacttggacaactattacaataaagaaattggaaaaactataatggttgacacttgacttgta 37359297  T
Q  295 atgtatt 301  Q
    |||||||    
T  37359296 atgtatt 37359290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 46725733 - 46725658
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||||||| |||||||||    
T  46725733 tttgtgtaataaagtgcattgaaaattgaaaattttaacatttttataaaataactacttaatttagaatgcttaa 46725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 113
Target Start/End: Original strand, 40614292 - 40614356
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattactta 113  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||||| ||||||||||||||    
T  40614292 aaagtttgtgtaataaagtgcattgaaaattgaaaacattgacatttttaaagaataattactta 40614356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 29612100 - 29612021
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| |||| |||||||||||| | ||||||||| |||||||||||||| |||| |||| ||||    
T  29612100 aaagtttgtgtaataaagtgcattggaaattgaaaactgtcacatttttaaagaataattacttattttagaatgtttaa 29612021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 9342683 - 9342757
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgctta 127  Q
    ||||||||||||| || |||||||||||||||||||||||||||||  ||||||||| ||||| || ||||||||    
T  9342683 tttgtgtaataaaatgcattgaaaattgaaaactttaacatttttaatgaataattatttaatctagaatgctta 9342757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 20821383 - 20821304
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| |||| ||||| ||| |||||| ||||||| |||||||||||||| |||| |||| ||||    
T  20821383 aaagtttgtgtaataaagtgcattggaaattaaaacctttaatatttttaaagaataattacttagtttagaatgtttaa 20821304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 45758008 - 45757930
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||| |||| |||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||    
T  45758008 aaagtttgtgtaatca-gtgcattgtaaattgaaaactttgacatttttaaagaataattgcttaatttaacatgcttaa 45757930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 24313627 - 24313552
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||| |||| || ||||||||||||||||||| ||||||||| |||||||||  |||||||| |||| ||||    
T  24313627 tttgtgtagtaaaatgcattgaaaattgaaaactttgacatttttaaagaataattgtttaatttagaatgtttaa 24313552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 48551099 - 48551041
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||||  ||||||||    
T  48551099 attgaaaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaa 48551041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 22853927 - 22854003
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||| |||||||||||| | | ||||||||||||||| ||||||||||| ||||   ||| ||||||||||||||||    
T  22853927 aaagtttatgtaataaagtgtaataaaaattgaaaactttgacatttttataaaata---actaaatttaaaatgcttaa 22854003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 28691976 - 28692029
Alignment:
Q  75 aaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||||| | |||||||||||||||||||| ||| ||||    
T  28691976 aaattgaaaactttaacattttaaaagaataattacttaatttaatatgtttaa 28692029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 54911280 - 54911202
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||| |||||| || || |||||||||| |||||||||||||||| | |||||||||| |||||||| |||| ||||    
T  54911280 aaagtttatgtaatcaa-tgtattgaaaatttaaaactttaacattttaaaagaataattatttaatttagaatgtttaa 54911202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 37388482 - 37388417
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaa 119  Q
    |||||||||| || || |||||||| |||||| ||| ||||||||| ||||||||||||||||||||    
T  37388482 tttgtgtaatcaa-tgcattgaaaactgaaaaatttcacatttttaaagaataattacttaatttaa 37388417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 22772940 - 22772872
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattt 117  Q
    |||||||||  |||||| || |||| |||||||||||||| | ||| |||| |||||||||||||||||    
T  22772940 aaagtttgtagaataaattgcattggaaattgaaaactttgaaattgttatggaataattacttaattt 22772872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 3027011 - 3027090
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||| | ||||| |||| ||| ||||| |||| | ||||||| | || |||||||||||||| |||||||||    
T  3027011 aaagtttgtgtagtgaagtgcattggaaaatgaaacctttgatatttttaaataaaaattacttaatttagaatgcttaa 3027090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 12140204 - 12140146
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||||||||||||| ||||||| | |||||||||| ||||||||  ||||||||    
T  12140204 attggaaattgaaaactttgacattttaaaagaataattatttaatttagcatgcttaa 12140146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 25061992 - 25062034
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataat 107  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||    
T  25061992 agtgcattgaaaattgaaaattttaacatttttaaagaataat 25062034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 128
Target Start/End: Original strand, 12908850 - 12908923
Alignment:
Q  55 tgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||| ||||| ||| ||||||||||| ||| |  |||||| | ||||||||||| |||||||||| ||||    
T  12908850 tgtgtaattaagtgcattaaaaattgaaaattttgatttttttaaaaaataattactttatttaaaatgtttaa 12908923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 45584355 - 45584431
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| || |  |||||||||| |||||||  | ||||| | |||||||||||||||||||| ||||||||    
T  45584355 aaagtttgtgtaatcaa-tatattgaaaattaaaaactt--atattttaaaagaataattacttaatttaacatgcttaa 45584431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 31807806 - 31807885
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||| |||| |||||||||    
T  31807806 aaagtttgtgtaataaagtgcattgaaaattgaaaactatcacatttttaaagaataattacttattttagaatgcttaa 31807885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 4040972 - 4040894
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||| ||  ||||||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||    
T  4040972 aaagtttgtgtaataa-gtatattgaaaattgaaaactttgacacttttatgtaataattacttaatttaaaatgcttaa 4040894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 31043080 - 31043002
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| || || ||||||||||||||||||| ||||||||| | ||||||||||||||||| |||||||||    
T  31043080 aaagtttgtgtaatcaa-tgcattgaaaattgaaaactttgacatttttaaaaaataattacttaatttagaatgcttaa 31043002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 40053372 - 40053294
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||||| |||| |||||| ||||||| |||||||||    
T  40053372 aaagtttgtgtaataaa-tgtattgaaaattgaaaactttgacatttttaaagaacaattacctaatttagaatgcttaa 40053294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 39973971 - 39973893
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||| |||| || || ||||||||||||||||||||||||||| | |||||||||||||||||||  ||||||||    
T  39973971 aaagtttgtataatcaa-tgcattgaaaattgaaaactttaacattttaaaagaataattacttaatttagcatgcttaa 39973893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 51904616 - 51904669
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatg 123  Q
    |||| |||||||||||||||||||||| | ||||||||||||||||||||||||    
T  51904616 attggaaattgaaaactttaacattttaaaagaataattacttaatttaaaatg 51904669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 39807603 - 39807521
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacat---ttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||| |||||||||||| ||||||||||||||| ||||||||   |||| | ||||||| ||||||||||||||| ||||    
T  39807603 aaagtttatgtaataaagtgcattgaaaattgaaaattttaacatttgttttgttgaataatgacttaatttaaaatgtttaa 39807521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 8791467 - 8791530
Alignment:
Q  50 aagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattactta 113  Q
    ||||||| ||||||||| | ||||||||||||||||||| ||||||||| ||| ||||||||||    
T  8791467 aagtttgcgtaataaagggcattgaaaattgaaaacttttacatttttaaagactaattactta 8791530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 27934755 - 27934834
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||| || ||||||||||||||  ||| | ||||||| | |||||||| |||||||| |||||||||    
T  27934755 aaagtttgtgtaataaattgtattgaaaattgaaacttttgatatttttaaataataattatttaatttagaatgcttaa 27934834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 42573811 - 42573874
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||||||||||||||| |||||||||| | |||||||||||||||||||  ||||||||    
T  42573811 agtgcattgaaaattgaaaaccttaacattttaaaagaataattacttaatttagcatgcttaa 42573874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 759254 - 759332
Alignment:
Q  50 aagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||||| |||| |||||| ||||||| ||| ||||||  ||| |||| |||||||| |||||||||    
T  759254 aagtttgtgtaataaagtgtattggaaattggaaactttgacaattttatgaaatgattatttaatttagaatgcttaa 759332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 48913 - 48981
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||||||   ||| ||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  48913 aaagtttgtgtaatcg-gtgcattgaaaattgaaaacttttacatttttcaagaataattacttaattta 48981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 37188555 - 37188627
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| ||||||||||       || |||||||||| ||||||||| ||||||||||||||||||    
T  37188555 aaagtttgtgtaataaagtgcattgaaaatt-------ttgacatttttattgaataattatttaatttaaaatgcttaa 37188627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 290669 - 290602
Alignment:
Q  50 aagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||||| | ||| |||| |||||||||||||| ||||||| | |||||||||||||||||||    
T  290669 aagtttgtgtaatca-gtgcattgtaaattgaaaactttgacattttaaaagaataattacttaattta 290602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 121
Target Start/End: Original strand, 32787286 - 32787354
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaa 121  Q
    ||||||||||||| || |||   ||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  32787286 tttgtgtaataaaatgtattaggaattgaacactttaacatttttaaagattaattacttaatttaaaa 32787354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 34833738 - 34833786
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    ||||||||||||||||| ||||||| |||||||||| ||||||||||||    
T  34833738 aaaattgaaaactttaatatttttaaagaataattatttaatttaaaat 34833786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 48947268 - 48947205
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||| |||||||||||||| ||||||||| | |||||||||||||||||  ||||||||    
T  48947268 agtgcattggaaattgaaaactttgacatttttaaaaaataattacttaatttagtatgcttaa 48947205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 1656511 - 1656443
Alignment:
Q  54 ttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    ||||||| |||| || |||| |||||||||| ||| ||||||||| | |||||||| ||||||||||||    
T  1656511 ttgtgtattaaaatgcattggaaattgaaaattttgacatttttaaaaaataattatttaatttaaaat 1656443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 16113998 - 16113920
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||| |||| |||||||||||||| ||||||| | | |||||||||||||| ||  ||||||||    
T  16113998 aaagtttgtgtaatca-gtgcattggaaattgaaaactttgacattttgaaaaaataattacttaatatagtatgcttaa 16113920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 34861254 - 34861317
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||| |||||||||  ||| ||||||||| | ||||||||||||||||| |||||||||    
T  34861254 agtgtattggaaattgaaatgtttgacatttttaaaaaataattacttaatttagaatgcttaa 34861317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 24075169 - 24075107
Alignment:
Q  59 taataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaa 121  Q
    |||||||||| |||||||||| || ||||| ||||||||| ||||  |||| |||||||||||    
T  24075169 taataaagtgcattgaaaattaaacactttgacatttttaaagaaatattatttaatttaaaa 24075107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 33791766 - 33791834
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||||||   ||| |||| |||||||||| ||| ||||||| | |||||||||||||||||||    
T  33791766 aaagtttgtgtaatcg-gtgtattggaaattgaaaaatttgacattttaaaagaataattacttaattta 33791834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 35259093 - 35259141
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||| |||||||||||||| ||||||||| | ||||||| |||||||||    
T  35259093 attggaaattgaaaacttttacatttttaaaaaataatttcttaattta 35259141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 35153331 - 35153258
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||||||||||||    
T  35153331 aaagtttgtgcaataaagtgcattgaaaattgaaaactttaacatttttaaagaataatgatttaatttaaaat 35153258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 38682016 - 38682095
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||| ||||    
T  38682016 aaagcttgtgtaataaagtgtattgaaaattgaaaactttaacaattttaaagattaattacttaacttaaaatgtttaa 38682095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 49622976 - 49623051
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||  |||  |||||||||| ||| |||||||||| ||||||||||||||||||||||||||||    
T  49622976 tttgtgtaataaagtatattagaaattgaaaattttgacatttttatggaataattacttaatttaaaatgcttaa 49623051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 32175511 - 32175434
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||| ||||||||  |||||||||||||||||   ||| |||||| ||||||||||||||||||||||||||||    
T  32175511 aaagtttgtgcaataaagtacattgaaaattgaaaactg--acacttttatggaataattacttaatttaaaatgcttaa 32175434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 3179033 - 3179112
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| |||| ||||||||||||||||| |||||| | | ||||||||| ||||| ||| |||||    
T  3179033 aaagtttgtgtaataaagtgtattggaaattgaaaactttaacttttttaaaaattaattacttgatttagaatacttaa 3179112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 133
Target Start/End: Complemental strand, 45743374 - 45743311
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaagaaat 133  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||||| || ||||| ||||    
T  45743374 attgaaaattgaaaactttgacatttttaaagaataatttcttaatttaacatacttaaaaaat 45743311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 46570555 - 46570630
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||| |  ||| |||||| |||||||||||||||||| ||| |||| ||||||||||||||| ||||    
T  46570555 tttgtgtaataaaatatattaaaaattaaaaactttaacatttttaaagagtaataacttaatttaaaatgtttaa 46570630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 40252715 - 40252657
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||||||||||||||| | || ||||||||||||||| ||| ||||    
T  40252715 attgaaaattgaaaactttaacatttttaaataacaattacttaatttaatatgtttaa 40252657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 49951737 - 49951795
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||||| ||||||| | |||||||||||||||||||  ||||||||    
T  49951737 attgaaaattgaaaactttgacattttaaaagaataattacttaatttagcatgcttaa 49951795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 23614695 - 23614627
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||| |||||||||||| ||||||||||| |||||||||| |||||| | |||||||| ||||||||    
T  23614695 aaagtttatgtaataaagtgtattgaaaattg-aaactttaacgtttttaaaaaataattatttaattta 23614627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 10506005 - 10505916
Alignment:
Q  48 taaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaa---taattacttaatttaaaatgcttaagaaata 134  Q
    |||||||||||||||||| |  |||| |||||||||||||| | ||||||| | ||   |||||| |||||||||||||||||| |||||    
T  10506005 taaagtttgtgtaataaaatatattgtaaattgaaaactttgagatttttaaataatactaattatttaatttaaaatgcttaaaaaata 10505916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 21687612 - 21687691
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| ||||||||||||| ||||| | ||| ||| ||||  ||||||||| ||| || ||||||    
T  21687612 aaagtttgtgtaataaagtgcattgaaaattgaacactttgatattattaaagaaatattacttaacttagaaagcttaa 21687691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 53261637 - 53261559
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| |  || |||| |||||||||||||| | ||||||| |||||||||||||||||||  ||||||||    
T  53261637 aaagtttgtgtaatcac-tgcattggaaattgaaaacttttaaatttttaaagaataattacttaatttagcatgcttaa 53261559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 40173525 - 40173583
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||| ||||||||||||||||||  |||| ||||||||||||| |||| ||||    
T  40173525 attgaaaattaaaaactttaacatttttaatgaatgattacttaatttagaatgtttaa 40173583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 52650732 - 52650785
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||||||||||||||||||| ||| |||||| || ||||||||| |||||||||    
T  52650732 agtgaattgaaaattgaaaattttgacatttgtaaagaataatttcttaattta 52650785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 22889319 - 22889271
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||||||| ||||||||||||| | || ||||||||||||||    
T  22889319 attgaaaattgaaaaatttaacatttttaaaaaacaattacttaattta 22889271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 22940983 - 22940935
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||||||| ||||||||||||| | || ||||||||||||||    
T  22940983 attgaaaattgaaaaatttaacatttttaaaaaacaattacttaattta 22940935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 23136549 - 23136613
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaag 129  Q
    |||| |||| |||||||||||||| | ||||| | |||||||||||||||||||| || ||||||    
T  23136549 agtgcattggaaattgaaaacttttaaattttaaaagaataattacttaatttaatatacttaag 23136613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 36876084 - 36876162
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| || || |||| ||||||||||| || ||||||| | |||||| ||||||||||||  ||||||||    
T  36876084 aaagtttgtgtaatcaa-tgtattggaaattgaaaacatttacattttaaaagaatagttacttaatttagcatgcttaa 36876162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 53622379 - 53622304
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||  || |||||||||| ||| ||||||| | | || ||||||||||||||| ||| ||||    
T  53622379 tttgtgtaataaagtgagctggaaattgaaaattttgacattttaaaaaaaaaattacttaatttaagatgtttaa 53622304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 31262970 - 31262917
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||| ||||||||| ||||||||| | ||||||||||||||||| |||||||||    
T  31262970 aaaatcgaaaactttgacatttttaaa-aataattacttaatttagaatgcttaa 31262917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 50343883 - 50343941
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||| |||  ||| || |||||| |||||||||||||| ||||||||||||||    
T  50343883 attgaaaattaaaatatttgacttttttaaagaataattacttattttaaaatgcttaa 50343941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 47937919 - 47937874
Alignment:
Q  73 gaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||||||||||||||| || |||||| ||||||||||| |||||||    
T  47937919 gaaaattgaaaactttgacttttttaaagaataattacataattta 47937874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 49421932 - 49421969
Alignment:
Q  60 aataaagtgaattgaaaattgaaaactttaacattttt 97  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  49421932 aataaagtgcattggaaattgaaaactttaacattttt 49421969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 4394944 - 4394904
Alignment:
Q  93 tttttatagaataattacttaatttaaaatgcttaagaaat 133  Q
    |||||| |||||||||||||||||||||||| |||| ||||    
T  4394944 tttttaaagaataattacttaatttaaaatgtttaaaaaat 4394904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 18939919 - 18939963
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||| |||||  |||||| |||||||||||||||||||    
T  18939919 aaaattgaaaattttaatttttttaaagaataattacttaattta 18939963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 27963156 - 27963208
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaattt 117  Q
    |||| ||||||||||||||| ||||| ||||| | |||||||||| |||||||    
T  27963156 agtgtattgaaaattgaaaattttaatattttaaaagaataattatttaattt 27963208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 32271248 - 32271163
Alignment:
Q  50 aagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaagaaatatc 136  Q
    ||||||||||||| || ||||||  |||||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||||    
T  32271248 aagtttgtgtaatcaa-tgaattagaaattgaaaactttaacatttttaaaaaataatttcttaatttaaaatgcttaaaaaatatc 32271163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 40628994 - 40629072
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | |||||||| ||||| ||||||||||||||||||  ||||||||||||||||||| ||| ||||    
T  40628994 aaagtttgtgtaatca-gtgaattggaaattaaaaactttaacatttttaatgaataattacttaatttaacatgtttaa 40629072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 111
Target Start/End: Complemental strand, 14453757 - 14453699
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattact 111  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||| |||||||||||    
T  14453757 tttgtgtaataaagtgcattgaaaattaaaaactttgacatttttatggaataattact 14453699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 1445160 - 1445239
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||   ||||||||||||| || ||||||    
T  1445160 aaagtttgtgtaataaagtgcattgaaaattgaacactttgacattattaaagagatattacttaatttagaaagcttaa 1445239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 18842282 - 18842360
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| || |  ||| |||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  18842282 aaagtttgtgtaatcaa-tacattaaaaattaaaaactttgacatttttaaagaataattacttaatttaaaatggttaa 18842360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 38047636 - 38047715
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| ||| |||||| |||  ||| |||||| || |||| |||||||||||||| |||||||||    
T  38047636 aaagtttgtgtaataaagtgcattaaaaattaaaatttttgacatttataaagaaaaattacttaatttagaatgcttaa 38047715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 44220740 - 44220814
Alignment:
Q  52 gtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgctta 127  Q
    ||||||||||| | ||| |||| |||||||||||||| ||||||| | |||||||||||||||||||| |||||||    
T  44220740 gtttgtgtaatga-gtgcattggaaattgaaaactttgacattttaaaagaataattacttaatttaacatgctta 44220814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 2376780 - 2376833
Alignment:
Q  75 aaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||||||| |||||||||| ||||||||||||||||||    
T  2376780 aaattgaaaactttgatatttttaaagaataattatttaatttaaaatgcttaa 2376833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 12002331 - 12002278
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||| |||| |||||||||||||| ||||||||| |||||||||||||||||||    
T  12002331 agtgcattggaaattgaaaacttttacatttttaaagaataattacttaattta 12002278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 28382814 - 28382890
Alignment:
Q  52 gtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||| |||||||||| ||| ||||||| ||| ||||||||||| | | |||| ||||||||||||||||| ||||    
T  28382814 gtttgtataataaagtgtattaaaaattgtaaattttaacattttaaaaaaatatttacttaatttaaaatgtttaa 28382890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 37449604 - 37449540
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaag 129  Q
    |||| ||||||||||||||| ||| ||||||| | | |||||||||||||||||||||| |||||    
T  37449604 agtgtattgaaaattgaaaagtttgacattttaaaaaaataattacttaatttaaaatgtttaag 37449540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 1876509 - 1876587
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||| |||| |||||||||| ||| ||||||| | |||||||||||||||||||  ||||||||    
T  1876509 aaagtttgtgtaatca-gtgcattggaaattgaaaattttgacattttaaaagaataattacttaatttagcatgcttaa 1876587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 8349783 - 8349705
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||| |||||||||||| ||| |||||| |||||||| ||||||||| || ||| ||| ||||||||||||| ||||    
T  8349783 aaagtttatgtaataaagtgtattaaaaatttaaaactttgacatttttaaag-atagttatttaatttaaaatgtttaa 8349705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 35501094 - 35501173
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| |||| ||||| |||||||||| ||||| | ||| |||||||| ||| || |||| ||||    
T  35501094 aaagtttgtgtaataaagtgcattggaaattaaaaactttaatattttcaaagattaattactaaatgtagaatgtttaa 35501173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 41960008 - 41960083
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgc 124  Q
    ||||||||| |||||||||| |||| ||  | |||||||||||||||||| |||||||||||| ||| || |||||    
T  41960008 aaagtttgtataataaagtgcattggaagcttaaaactttaacatttttaaagaataattactaaatgtagaatgc 41960083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 4279019 - 4278957
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattactta 113  Q
    ||||||||||||||   ||| |||| ||||||||||||||| |||||||||| ||||||||||||    
T  4279019 aaagtttgtgtaatg--gtgtattggaaattgaaaactttatcatttttataaaataattactta 4278957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 31844244 - 31844313
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||| |||| ||||| |||| ||||| |||||||| || ||||||  ||||||||||||||||||    
T  31844244 aaagtttgtataatgaagtgcattggaaattcaaaactttgacttttttaaggaataattacttaattta 31844313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 43841087 - 43841043
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||| ||||| ||||||| |||||||||||||||||||    
T  43841087 aaaattgaaaaatttaatatttttaaagaataattacttaattta 43841043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 11533296 - 11533233
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||| |||||||||||||| ||||||||| |||||||||  ||||||||| ||| ||||    
T  11533296 agtgcattggaaattgaaaactttgacatttttaaagaataatttattaatttaacatgtttaa 11533233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 20523008 - 20522945
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| ||||||||||||||||||| | ||||| | ||||||||||||||| |||  ||||||||    
T  20523008 agtgcattgaaaattgaaaacttttaaattttgaaagaataattacttaacttagcatgcttaa 20522945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 30461358 - 30461316
Alignment:
Q  93 tttttatagaataattacttaatttaaaatgcttaagaaatat 135  Q
    |||||| |||||||||||||| |||||||||||||| ||||||    
T  30461358 tttttaaagaataattacttattttaaaatgcttaaaaaatat 30461316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Original strand, 5218083 - 5218132
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaa 119  Q
    |||||||||| |||| ||||||||||||| |||||||||  |||||||||    
T  5218083 attgaaaattaaaaattttaacatttttaaagaataattttttaatttaa 5218132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 44907283 - 44907219
Alignment:
Q  65 agtgaattgaaaattgaaaac-tttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||||||||||||||  ||| ||||||||| | ||||||||||||||||| || ||||||    
T  44907283 agtgcattgaaaattgaaaaagtttgacatttttaaaaaataattacttaatttagaaagcttaa 44907219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 27752728 - 27752647
Alignment:
Q  48 taaagtttgtgtaataaagtgaatt-gaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||||| |||| ||||||||||||||||| |||| ||||    
T  27752728 taaagtttgtgtaataaagtgcattagaaaattgaaaactttgacatttgtataaaataattacttaatttagaatgtttaa 27752647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 29716791 - 29716870
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| |||| |||||||||||||| ||||||| | | ||||||| || |||||| |||||||||    
T  29716791 aaagtttgtgtaataaagtgcattggaaattgaaaactttgacattttaaaaaaataattgctgaatttagaatgcttaa 29716870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 34552534 - 34552608
Alignment:
Q  54 ttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||| ||||||  |||||||||| |||||||||| ||||||| |||||||||||| ||| ||||||||||||    
T  34552534 ttgtgtattaaagtacattgaaaattaaaaactttaatatttttaaagaataattactaaatgtaaaatgcttaa 34552608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 123
Target Start/End: Original strand, 5528051 - 5528119
Alignment:
Q  55 tgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatg 123  Q
    ||||| ||||| || |||||||||| |||||||| |||||||| ||||||||||| |||||||||||||    
T  5528051 tgtgttataaaatgcattgaaaatttaaaactttgacatttttgtagaataattatttaatttaaaatg 5528119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 23344651 - 23344572
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| |||| |||||||| ||||| |||||| || ||||  ||||||||||||| || ||||||    
T  23344651 aaagtttgtgtaataaagtgcattggaaattgaacactttgacatttgtaaagaaatattacttaatttagaaagcttaa 23344572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 34552211 - 34552265
Alignment:
Q  57 tgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattact 111  Q
    ||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||    
T  34552211 tgtaataaaatgcattgaaaattgaaaactttaatatttttaaagaataattact 34552265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 34552354 - 34552407
Alignment:
Q  54 ttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataat 107  Q
    ||||||||||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  34552354 ttgtgtaataaagtgcattggaaattgaaaactttaatatttttaaagaataat 34552407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 3753121 - 3753200
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||  |  |||||||||||||||||||||| | ||||| | ||||||||||||| |||||  ||||||||    
T  3753121 aaagtttgtgtaaccatttgaattgaaaattgaaaacttttaaattttgaaagaataattactttatttatcatgcttaa 3753200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 3769344 - 3769407
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattactt 112  Q
    |||||||||||||| |  |||||||||||||||||||||| | ||||| | |||||||||||||    
T  3769344 aaagtttgtgtaatcatttgaattgaaaattgaaaacttttaaattttgaaagaataattactt 3769407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 10364807 - 10364754
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||| |||| |||||||||||||| | ||||||| |||||||||||||||||||    
T  10364807 agtgcattgtaaattgaaaactttgatatttttaaagaataattacttaattta 10364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 13445783 - 13445836
Alignment:
Q  75 aaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| ||||||||| |||||| ||||||||||||  ||||||||    
T  13445783 aaattgaaaactttcacatttttaaagaatacttacttaatttagcatgcttaa 13445836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 133
Target Start/End: Original strand, 25036991 - 25037075
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaagaaat 133  Q
    |||||||||| ||||||||| |||||||||| |||| ||| || |||||| | ||||||||||||||||||||||||||| ||||    
T  25036991 aaagtttgtgcaataaagtgcattgaaaattaaaaattttgacctttttaaataataattacttaatttaaaatgcttaaaaaat 25037075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 43492227 - 43492307
Alignment:
Q  48 taaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||||||||| |||| |||||| ||| ||| |||||| || ||||||||||||||||||| |||||||||    
T  43492227 taaagtttgtgtaataaagtgcattggaaattgtaaattttgacatttctaaagaataattacttaatttagaatgcttaa 43492307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 8238029 - 8237961
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||||||||||||| | ||| |||||||| |||||||||| ||||||||| |||||||||||||||||||    
T  8238029 aaagtttgtgtaatca-gtgcattgaaaaatgaaaactttgacatttttaaagaataattacttaattta 8237961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 38362327 - 38362256
Alignment:
Q  57 tgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||| |  ||||||||||||||||||||| |||||||  |||||||||  |||||||||||||||||    
T  38362327 tgtaataaaatacattgaaaattgaaaactttaatatttttaatgaataattatctaatttaaaatgcttaa 38362256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 44452068 - 44452147
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||||||| |||| |||||||||  ||| | ||||||| | ||||||||||||||||| |||| ||||    
T  44452068 aaagtttgtgtaataaagtgcattggaaattgaaacttttgatatttttaaataataattacttaatttagaatgtttaa 44452147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 19620056 - 19619993
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||| |||||||||||||| ||||||||| ||||||||| |||||||||  ||||||||    
T  19620056 agtgcattggaaattgaaaactttgacatttttaaagaataatttcttaatttagcatgcttaa 19619993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 31498656 - 31498734
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||| ||| || || ||||||||||||||||||||||||||| | | |||| |||||||||||| |||| ||||    
T  31498656 aaagtttgtgcaatcaa-tgtattgaaaattgaaaactttaacattttaaaaaaatatttacttaatttagaatgtttaa 31498734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 38988778 - 38988707
Alignment:
Q  57 tgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||| |||| ||||| || ||||||||||| ||| | ||| |||||||||||||||| ||||||    
T  38988778 tgtaataaagtgcattggaaattaaacactttaacattattaaaaaattattacttaatttaaaaagcttaa 38988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 37135459 - 37135537
Alignment:
Q  50 aagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||| ||||||| |||||||||| |||  ||| | ||||||| | ||||||||||||||||| ||| |||||    
T  37135459 aagtttgtgtagtaaagtgtattgaaaattaaaacttttgatatttttaaataataattacttaatttataatacttaa 37135537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 41150068 - 41150120
Alignment:
Q  76 aattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||| |||||||| ||||| |||||||||||||||||||  ||||||||    
T  41150068 aattgaaatctttaacacttttaaagaataattacttaatttatgatgcttaa 41150120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 3267637 - 3267715
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||| ||||||||| ||||||||| | ||||| | ||||||||||||| |||||  ||||||||    
T  3267637 aaagtttgtgtaatga-gtgcattgaaaatggaaaacttttaaattttaaaagaataattactttatttagcatgcttaa 3267715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 26872811 - 26872906
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaagaaatatcggagcact 144  Q
    ||||||||| ||||||| || |||| |||||||||  ||| | |||| || | ||||||||||| ||||| ||||||||| || | ||||||||||    
T  26872811 aaagtttgtataataaaatgcattggaaattgaaacttttgatatttataaataataattacttgatttagaatgcttaaaaagtgtcggagcact 26872906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 34299770 - 34299848
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | |||  ||| |||||||||||||| ||||||||| ||||||||| |||||| ||  ||||||||    
T  34299770 aaagtttgtgtaatca-gtgctttgtaaattgaaaactttgacatttttaaagaataattgcttaatctagcatgcttaa 34299848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 46716258 - 46716180
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||| |||| || || |||||| |||||||||||| | ||||||| |||||||||| |||||||| |||| ||||    
T  46716258 aaagtttgtataattaa-tgcattgaacattgaaaactttgatatttttaaagaataattatttaatttagaatggttaa 46716180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 39316344 - 39316398
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||| ||| ||||| ||  |||||||||||||||||||| ||||||||    
T  39316344 aaaattgaaaattttgacattattgaagaataattacttaatttaatatgcttaa 39316398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 24610865 - 24610933
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||||||||||||| | |||||||  ||||| |||||||||||||||| | |||||||||  ||||||||    
T  24610865 aaagtttgtgtaatta-gtgaattagaaattcaaaactttaacattttaaaagaataattgtttaattta 24610933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 5691444 - 5691503
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataatta 109  Q
    ||||||||||||||||||| | ||  || ||||||| ||||||||||||| ||||||||||    
T  5691444 aaagtttgtgtaataaagtaagtttgaagttgaaaa-tttaacatttttaaagaataatta 5691503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 17774312 - 17774387
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||||| |||| |||||||||| ||| | ||||||| ||||||||||||| |||||||||||||||    
T  17774312 tttgtgtaataaagtgtattggaaattgaaaaatttgatatttttaaagaataattacttgatttaaaatgcttaa 17774387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 111
Target Start/End: Complemental strand, 28639632 - 28639570
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattact 111  Q
    |||||||||||||||||||| |||| ||  |||||||||||||||||||| ||||||||||||    
T  28639632 aaagtttgtgtaataaagtgcattggaagctgaaaactttaacatttttaaagaataattact 28639570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 25767551 - 25767630
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| ||||| |||||||||  |||||||||||| ||||||||||||||| ||||  |||| ||||||||||| ||||||    
T  25767551 aaagattgtgcaataaagtgttttgaaaattgaacactttaacatttttaaagaaatattatttaatttaaaaagcttaa 25767630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 43000829 - 43000757
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaa 121  Q
    ||||||||| | | |||||| |||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||    
T  43000829 aaagtttgtttgacaaagtgcattgaaaattaaaaattttgacatttttaaagaataattactttatttaaaa 43000757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 14309118 - 14309192
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||| || || |||| |||||||||||||| | ||||||| ||||||| |||||||||||| ||||||||    
T  14309118 tttgtgtaattaa-tgcattggaaattgaaaactttgatatttttaaagaataactacttaatttaatatgcttaa 14309192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 41568709 - 41568772
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| ||||||||||||||||||| ||||||||  |||||||| ||||||||||  ||||||||    
T  41568709 agtgcattgaaaattgaaaactttgacatttttgaagaataataacttaatttagtatgcttaa 41568772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 26686679 - 26686748
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaa 119  Q
    ||||||||||||||  | || |||||||||| |||||||| ||||||||| |||||| |||||||||||||    
T  26686679 aaagtttgtgtaatcga-tgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaa 26686748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 26956410 - 26956479
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaa 119  Q
    ||||||||||||||  | || |||||||||| |||||||| ||||||||| |||||| |||||||||||||    
T  26956410 aaagtttgtgtaatcga-tgtattgaaaattaaaaacttttacatttttaaagaatacttacttaatttaa 26956479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 12448750 - 12448671
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaag 129  Q
    |||||||||||||| |  || ||||||||||||||  |||||| ||||||| |||||||| |||| |||||||| ||||||    
T  12448750 aaagtttgtgtaatcat-tgcattgaaaattgaaatatttaacttttttattgaataatttcttattttaaaatccttaag 12448671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 27325866 - 27325917
Alignment:
Q  65 agtgaattgaaaattgaaaactttaacatttttatagaataattacttaatt 116  Q
    |||| ||||||||||||||| ||| ||||||||| ||||||||||| |||||    
T  27325866 agtgcattgaaaattgaaaagtttgacatttttaaagaataattacctaatt 27325917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 36609158 - 36609236
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||  ||||||||||||||||||| | ||||||  |||||||||| |||||||| |||| ||||    
T  36609158 aaagtttgtgtaatta-gtacattgaaaattgaaaactttgatatttttgaagaataattatttaatttagaatgtttaa 36609236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 26432321 - 26432263
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||||||||| ||||  ||||| | | |||||||||||||||||||||||||||    
T  26432321 attggaaattgaaaagtttattattttaaaaaaataattacttaatttaaaatgcttaa 26432263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 26453688 - 26453745
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||| ||| ||||||||| | ||| |||||||||||||||||| ||||    
T  26453688 attgaaaattgaaaagtttgacatttttaaaaaat-attacttaatttaaaatgtttaa 26453745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 39335724 - 39335671
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||| ||||||||| |||||||| |||||||||| ||||||||||||| ||||    
T  39335724 aaaattaaaaacttta-catttttaaagaataattatttaatttaaaatgtttaa 39335671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 34032142 - 34032195
Alignment:
Q  75 aaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||  |||||| |||||| |||||||||||||| |||| |||||||||    
T  34032142 aaattgaaatatttaacttttttaaagaataattacttattttagaatgcttaa 34032195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 8200073 - 8200117
Alignment:
Q  78 ttgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    ||||||| ||| | |||||||| ||||||||||||||||||||||    
T  8200073 ttgaaaattttgatatttttatggaataattacttaatttaaaat 8200117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 12221496 - 12221448
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||||||||| |||||||| ||| ||||| ||||||| |||||||||||    
T  12221496 attgaaaattaaaaactttgacaattttaaagaataactacttaattta 12221448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 122
Target Start/End: Complemental strand, 22601834 - 22601782
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    |||||||||| |||| ||| | ||||||| | |||||||||||||||||||||    
T  22601834 attgaaaattaaaaattttgatatttttaaaaaataattacttaatttaaaat 22601782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 38594978 - 38595026
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||| |||||||||| ||| ||||||| | |||||||||||||||||||    
T  38594978 attggaaattgaaaattttgacattttaaaagaataattacttaattta 38595026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 431660 - 431726
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaat 115  Q
    ||||||||||||| |||||| |||| |||||||||| ||||||||||||| ||||||||||||||||    
T  431660 aaagtttgtgtaaaaaagtgcattggaaattgaaaattttaacatttttaaagaataattacttaat 431726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 53 - 128
Target Start/End: Original strand, 9049181 - 9049255
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||| || || ||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||    
T  9049181 tttgtgtaattaa-tgcattgaaaattgaaaaatttaacattttaaaagaataattacttaatttaacatgcttaa 9049255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 12762898 - 12762976
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||| | |||| |||| |||||||||| ||||||||||||  |||||||||||||||||| ||||||||||    
T  12762898 aaagtttgtgtaa-acagtgcattggaaattgaaaattttaacattttttaagaataattacttaattttaaatgcttaa 12762976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 37284933 - 37284985
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    ||||||||||||||| ||||| ||||||| | |||||||||||||||||||||    
T  37284933 attgaaaattgaaaaatttaagatttttaaaaaataattacttaatttaaaat 37284985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 12848499 - 12848577
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||| | || |||||||||||||| ||||| ||| |||||| ||||||||||||| ||||||||    
T  12848499 aaagtttgtgtaatta-gtgcaatggaaattgaaaactttgacattattaaagaatagttacttaatttaatatgcttaa 12848577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 3666465 - 3666537
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    ||||||| |||||| || || ||||| |||| |||| ||||| ||||||| |||||||||||||||||||||||    
T  3666465 aaagtttatgtaatcaa-tgtattgagaattaaaaattttaatatttttaaagaataattacttaatttaaaat 3666537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 8087010 - 8086961
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaatttaaaatg 123  Q
    ||||||||||| ||||||||||||| | |||||||| |||||||||||||    
T  8087010 aaaattgaaaagtttaacatttttaaaaaataattatttaatttaaaatg 8086961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 12205595 - 12205526
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    |||||||||||| ||| |||| |||| ||||||||| | |||| || | |||||||||||||||||||||    
T  12205595 tttgtgtaataatgtgcattgcaaatggaaaactttgatatttataaaaaataattacttaatttaaaat 12205526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 28858173 - 28858105
Alignment:
Q  59 taataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||  |||||||||| |||| ||| ||||||||| |||||| |||||||||||| |||||||||    
T  28858173 taataaagtatattgaaaattaaaaa-tttgacatttttaaagaatatttacttaatttagaatgcttaa 28858105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 30822767 - 30822823
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgctt 126  Q
    |||| |||||||||||||| ||||||| | | |||||||||||||||||||| ||||    
T  30822767 attggaaattgaaaactttgacattttcaaaaaataattacttaatttaaaaagctt 30822823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 122
Target Start/End: Complemental strand, 3191129 - 3191078
Alignment:
Q  71 ttgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    |||||||||||||| ||||| ||||||| ||| |||||| ||||||||||||    
T  3191129 ttgaaaattgaaaaatttaatatttttaaagactaattatttaatttaaaat 3191078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 8964467 - 8964393
Alignment:
Q  53 tttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||| || || |||| |||||||||  ||| || |||||| ||||||||||||||||||| |||||||||    
T  8964467 tttgtgtaatcaa-tgcattggaaattgaaatattttacttttttaaagaataattacttaatttagaatgcttaa 8964393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 24389650 - 24389728
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | | | |||| |||||||||||||| |||| || | |||||||||||||||||||  ||||||||    
T  24389650 aaagtttgtgtaatca-gcgcattggaaattgaaaactttgacatcttaaaagaataattacttaatttagcatgcttaa 24389728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 25627027 - 25626949
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||| ||||||| || || |||| |||| ||||||||||| ||||||| |||||||||| |||||||| ||| |||||    
T  25627027 aaagttggtgtaatcaa-tgtattggaaatcgaaaactttaaaatttttaaagaataattatttaatttagaatacttaa 25626949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 33068595 - 33068638
Alignment:
Q  75 aaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    |||||||||||||| ||||||||| | |||||||||||||||||    
T  33068595 aaattgaaaactttcacatttttaaaaaataattacttaattta 33068638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 40874874 - 40874823
Alignment:
Q  71 ttgaaaattgaaaac-tttaacatttttatagaataattacttaatttaaaa 121  Q
    ||||||||||||||  ||||||||||||| | ||||||||||||||||||||    
T  40874874 ttgaaaattgaaaaagtttaacatttttaaaaaataattacttaatttaaaa 40874823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 3191217 - 3191167
Alignment:
Q  72 tgaaaattgaaaactttaacatttttatagaataattacttaatttaaaat 122  Q
    ||||||||||||| ||||| ||||||| ||| |||||| ||||||||||||    
T  3191217 tgaaaattgaaaaatttaatatttttaaagactaattatttaatttaaaat 3191167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 33455027 - 33454969
Alignment:
Q  70 attgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||| |||||||||||||| ||||||||| |||||| || |||||||||  ||||||||    
T  33455027 attgtaaattgaaaactttgacatttttaaagaatagtttcttaatttagcatgcttaa 33454969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 11385532 - 11385463
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||| |||||||| |||| |||| ||||| ||| | | ||||| ||||||||||||| |||||    
T  11385532 aaagtttgtgttataaagtgtattggaaatagaaaaatttgataattttaaagaataattacttgattta 11385463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 21277606 - 21277554
Alignment:
Q  76 aattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||| ||| ||||||| | | ||||||||||||||||||||| |||||    
T  21277606 aattgaaaagtttgacattttaaaaaaataattacttaatttaaaatacttaa 21277554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 30523082 - 30523011
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaa 121  Q
    |||||||||||||| | ||  |||| |||||||||||||| ||||| ||| |||| ||||| |||||||||||    
T  30523082 aaagtttgtgtaatta-gtacattggaaattgaaaactttgacattgttaaagaaaaattatttaatttaaaa 30523011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 37313695 - 37313774
Alignment:
Q  48 taaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    ||||||||||||||| | ||| |||  ||||| |||| ||| |  |||||| |||| ||||||||||||||||||||||||    
T  37313695 taaagtttgtgtaatta-gtgcattacaaattaaaaattttgatttttttaaagaaaaattacttaatttaaaatgcttaa 37313774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 19622 - 19578
Alignment:
Q  74 aaaattgaaaactttaacatttttatagaataattacttaattta 118  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  19622 aaaattgaaaactttaacatttttaaagaataattacttaattta 19578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 26780 - 26702
Alignment:
Q  49 aaagtttgtgtaataaagtgaattgaaaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| | ||| ||||||||||||||||||| ||||||| | | |||||||||||||||||  ||||||||    
T  26780 aaagtttgtgtaatca-gtgcattgaaaattgaaaactttgacattttaaaataataattacttaatttagcatgcttaa 26702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 5816 - 5763
Alignment:
Q  75 aaattgaaaactttaacatttttatagaataattacttaatttaaaatgcttaa 128  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||||| |||||    
T  5816 aaattgaaaactttgacatttttaaagaaaaattacttaatttaaaattcttaa 5763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University