View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15457_low_13 (Length: 301)

Name: NF15457_low_13
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15457_low_13
NF15457_low_13
[»] chr4 (13 HSPs)
chr4 (18-293)||(42756658-42756935)
chr4 (41-219)||(11560206-11560383)
chr4 (61-219)||(13909799-13909957)
chr4 (61-219)||(24180591-24180749)
chr4 (38-189)||(35648520-35648671)
chr4 (38-219)||(12576835-12577016)
chr4 (38-203)||(24182429-24182594)
chr4 (138-189)||(22681162-22681213)
chr4 (38-212)||(28474811-28474986)
chr4 (151-209)||(2041166-2041224)
chr4 (36-205)||(13239976-13240143)
chr4 (165-211)||(50159145-50159191)
chr4 (140-212)||(285179-285251)
[»] scaffold1315 (1 HSPs)
scaffold1315 (68-290)||(1275-1499)
[»] scaffold1293 (1 HSPs)
scaffold1293 (68-290)||(572-796)
[»] chr2 (15 HSPs)
chr2 (17-291)||(6466882-6467158)
chr2 (61-219)||(45661111-45661269)
chr2 (220-293)||(20442863-20442936)
chr2 (38-219)||(5788011-5788192)
chr2 (61-219)||(45662556-45662713)
chr2 (52-203)||(14872722-14872873)
chr2 (52-219)||(45053988-45054155)
chr2 (138-207)||(41752905-41752974)
chr2 (42-187)||(41753953-41754098)
chr2 (53-184)||(36720074-36720205)
chr2 (57-103)||(25546950-25546996)
chr2 (152-189)||(39403381-39403418)
chr2 (38-102)||(14873425-14873489)
chr2 (63-202)||(45058390-45058530)
chr2 (33-180)||(45275944-45276089)
[»] scaffold0169 (1 HSPs)
scaffold0169 (31-212)||(5099-5279)
[»] chr1 (5 HSPs)
chr1 (36-205)||(31089469-31089639)
chr1 (52-203)||(16852891-16853042)
chr1 (36-205)||(27342183-27342355)
chr1 (131-179)||(11976911-11976959)
chr1 (52-189)||(43387042-43387179)
[»] chr8 (23 HSPs)
chr8 (61-219)||(43215467-43215625)
chr8 (50-203)||(18431492-18431645)
chr8 (61-204)||(45528202-45528345)
chr8 (61-219)||(15275927-15276084)
chr8 (61-219)||(15456296-15456453)
chr8 (38-187)||(38291757-38291906)
chr8 (52-189)||(15276763-15276900)
chr8 (52-189)||(15457132-15457269)
chr8 (30-182)||(760653-760805)
chr8 (19-95)||(5685854-5685930)
chr8 (116-189)||(19263301-19263374)
chr8 (138-207)||(23140535-23140604)
chr8 (159-212)||(38291332-38291385)
chr8 (19-101)||(45247753-45247835)
chr8 (46-103)||(14715279-14715336)
chr8 (42-187)||(23141588-23141733)
chr8 (139-207)||(13758981-13759049)
chr8 (37-92)||(38291216-38291271)
chr8 (131-189)||(20874610-20874668)
chr8 (38-212)||(36990271-36990444)
chr8 (114-219)||(42797046-42797151)
chr8 (29-89)||(23686596-23686656)
chr8 (30-70)||(32916816-32916856)
[»] chr6 (11 HSPs)
chr6 (220-293)||(24360852-24360925)
chr6 (52-194)||(11554328-11554470)
chr6 (52-194)||(4852808-4852950)
chr6 (116-186)||(2970421-2970491)
chr6 (111-187)||(18089937-18090013)
chr6 (38-203)||(26596659-26596824)
chr6 (61-212)||(34515068-34515220)
chr6 (46-184)||(24397910-24398047)
chr6 (117-183)||(26595896-26595962)
chr6 (42-187)||(1599831-1599976)
chr6 (116-220)||(29214195-29214299)
[»] chr3 (14 HSPs)
chr3 (52-203)||(12125429-12125580)
chr3 (73-219)||(9265297-9265443)
chr3 (61-219)||(9266725-9266882)
chr3 (38-189)||(20934184-20934335)
chr3 (27-204)||(6087136-6087313)
chr3 (38-203)||(6436831-6436996)
chr3 (61-203)||(9262779-9262921)
chr3 (116-189)||(50419-50492)
chr3 (152-211)||(14240497-14240556)
chr3 (45-108)||(431968-432031)
chr3 (42-101)||(25225358-25225417)
chr3 (38-102)||(9263473-9263537)
chr3 (18-77)||(10973269-10973326)
chr3 (29-89)||(39187289-39187349)
[»] scaffold0159 (1 HSPs)
scaffold0159 (38-219)||(32384-32565)
[»] chr7 (13 HSPs)
chr7 (52-204)||(17474599-17474751)
chr7 (52-204)||(17578463-17578615)
chr7 (74-211)||(6202346-6202483)
chr7 (52-204)||(17510083-17510235)
chr7 (52-204)||(17542979-17543131)
chr7 (36-127)||(42078967-42079060)
chr7 (61-210)||(38788064-38788213)
chr7 (18-79)||(15464396-15464457)
chr7 (150-219)||(48553243-48553312)
chr7 (60-207)||(24708450-24708597)
chr7 (138-181)||(27938832-27938875)
chr7 (38-115)||(6188756-6188833)
chr7 (38-115)||(6195272-6195349)
[»] scaffold0061 (1 HSPs)
scaffold0061 (109-204)||(45583-45678)
[»] scaffold0017 (1 HSPs)
scaffold0017 (109-204)||(153109-153204)
[»] scaffold0191 (1 HSPs)
scaffold0191 (114-219)||(12247-12352)
[»] scaffold0050 (1 HSPs)
scaffold0050 (114-210)||(10561-10657)
[»] scaffold1312 (1 HSPs)
scaffold1312 (63-189)||(2-128)
[»] scaffold0377 (1 HSPs)
scaffold0377 (38-127)||(12561-12652)
[»] scaffold0074 (1 HSPs)
scaffold0074 (44-184)||(30831-30970)
[»] scaffold0024 (1 HSPs)
scaffold0024 (152-212)||(46261-46321)
[»] scaffold0380 (1 HSPs)
scaffold0380 (38-212)||(15251-15425)
[»] scaffold0284 (2 HSPs)
scaffold0284 (88-186)||(7539-7637)
scaffold0284 (19-146)||(6413-6540)
[»] chr5 (5 HSPs)
chr5 (151-189)||(9048715-9048753)
chr5 (34-92)||(15301554-15301611)
chr5 (38-189)||(24541767-24541918)
chr5 (38-189)||(38015875-38016026)
chr5 (81-178)||(38012839-38012936)
[»] scaffold1743 (1 HSPs)
scaffold1743 (116-189)||(185-258)
[»] scaffold0012 (1 HSPs)
scaffold0012 (46-103)||(95951-96008)
[»] scaffold0051 (1 HSPs)
scaffold0051 (30-77)||(17307-17354)
[»] scaffold1804 (1 HSPs)
scaffold1804 (137-175)||(1034-1072)
[»] scaffold0211 (1 HSPs)
scaffold0211 (167-204)||(16017-16054)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 42756935 - 42756658
Alignment:
Q  18 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagca 117  Q
    |||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  42756935 catatcatagacacggagaatctcacacttaagggagagatgttaatgtgtcatttgtgagtaaaacttctacattggatgcaagactatatattgagca 42756836  T
Q  118 acatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatg 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||  |||    
T  42756835 acatataagttaaatgacaaatatacctaaagtcttaaggttttggatgaagatgtggtgtcaatctcacttatggggtttctctaagccaaatgtgatg 42756736  T
Q  218 at--aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctttgct 293  Q
    ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42756735 attcaagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctttgct 42756658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 219
Target Start/End: Original strand, 11560206 - 11560383
Alignment:
Q  41 cacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaata 140  Q
    ||||||||||||||||||| |||||||||||  |||||| |||||| |||||||||||||||| |||| ||| | ||| ||||| || | ||||||||||    
T  11560206 cacacttaagggagagatgttaatgtgtcatgggtgagttaaacttatacattggatgcaagagtatatattga-caatatatacgtgagatgacaaata 11560304  T
Q  141 tacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    ||| |   |||||||||||||   ||||||||| || |||||  || || | | ||||||||||| ||||||| |||||    
T  11560305 tacttgatgtcttaaggttttaagtgaagatgtagtttcaataccaattctagaatttctcttagtcaaatgcgatgat 11560383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 13909799 - 13909957
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||||| | ||| | |||||||||   |||||||| |||    
T  13909799 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaaataaatattgagcaacatataagtgagatgtccaatatacctgatgtcttaagattt 13909898  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    || ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  13909899 tgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaatgtaatgat 13909957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 24180749 - 24180591
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||| | ||||| | ||||||||||   |||||||||||    
T  24180749 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataactgaaatgtccaatatacctaatatcttaaggttt 24180650  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    || ||||| |||| ||||||| |||| || |||| ||||||||||  ||||| ||||||    
T  24180649 tgaatgaaaatgtagtgtcaaactcatttttggggtttctcttagataaatgtaatgat 24180591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 35648671 - 35648520
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||||||| ||||||||||||| | |||| |||| ||||||| |||||||||||||| | |||| | |||| ||| |||||||||||||  | | ||  |    
T  35648671 tctcacacgtaagggagagatgtttatgtttcatgtgtgagttaaacttctacattgtaagcaatagtatatattgagcaacatataagcgagaagaaca 35648572  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||||||  | |||||| ||||   | |||||||||||||||||||||||    
T  35648571 atatacctaatgccttaagattttacgtaaagatgtggtgtcaatctcactt 35648520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 12577016 - 12576835
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    ||||||||||||  ||| |||| |||||||||||  | |||| |||||| ||| |||||||||||| |  | ||| | |||||||| ||| | |||||      
T  12577016 tctcacacttaaaagagcgatgataatgtgtcataggggagttaaacttttacgttggatgcaagagtggatattaaacaacatattagtgagatgaccc 12576917  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    |||||||||  ||||||| ||||||| | || || |||| ||||||||| || ||||  |||||||||||||||| ||||||    
T  12576916 atatacctattgtcttaaagttttgggtcaaaatatggtctcaatctcatttgtggggattctcttagccaaatgtaatgat 12576835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 24182594 - 24182429
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||| | |||| | |||| ||| || |||||  | || | ||||| |    
T  24182594 tctcacacataatagagatatgttaatgtgtcatgtgtaagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgacta 24182495  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    |||||| ||  || |||||||||  | ||||||||||||||||||||||||| | |||||||||||    
T  24182494 atatacataatgtattaaggtttcaggtgaagatgtggtgtcaatctcacttgtcggatttctctt 24182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 22681213 - 22681162
Alignment:
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||||||  |||||||||||| || || ||||||||||||||||||||||    
T  22681213 atatacctaatgtcttaaggtttagggtggagatgtggtgtcaatctcactt 22681162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 28474986 - 28474811
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||||||| |||  |||| ||| | ||||||||| ||||||| |||||||||||||| | |||| | |||| ||| ||  ||||  | || | ||| | |    
T  28474986 tctcacacataatagagatatgttgatgtgtcatgtgtgagttaaacttctacattgaaagcaaaagtatatattgagatacatgaatgtgagatggcta 28474887  T
Q  138 atatacctagagtctta-aggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
    |||||| ||  |||||  ||||||||  |||||||||||||||||||||| || |||| |||||||| | ||||||    
T  28474886 atatacataatgtctttcaggttttgagtgaagatgtggtgtcaatctcatttttggggtttctcttggtcaaatg 28474811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 2041166 - 2041224
Alignment:
Q  151 cttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaa 209  Q
    ||||||||||||| ||||||||||||||| | ||||||| || | || |||||||||||    
T  2041166 cttaaggttttgggtgaagatgtggtgtccaactcacttgtgtggttgctcttagccaa 2041224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 13240143 - 13239976
Alignment:
Q  36 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgac 135  Q
    ||||||||| |||||||||||||  | ||||  |||  |||||| |||||||| | |||||||||| | |||| ||| || |||| ||  |  | || |     
T  13240143 aatctcacatttaagggagagatatttatgttccat--gtgagttaaacttctccgttggatgcaatagtatatattgagtaacaaatgcgcgagataaa 13240046  T
Q  136 aaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 205  Q
    ||||||||||| ||||||||| |||| |  ||||||||| | |||||||||||| | || ||||||||||    
T  13240045 aaatatacctaaagtcttaagattttaggcgaagatgtgatctcaatctcacttgtagggtttctcttag 13239976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 50159145 - 50159191
Alignment:
Q  165 tgaagatgtggtgtcaatctcacttatgggatttctcttagccaaat 211  Q
    |||||||||||||||||||| ||||||| | |||||||||| |||||    
T  50159145 tgaagatgtggtgtcaatcttacttatgaggtttctcttagtcaaat 50159191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 285179 - 285251
Alignment:
Q  140 atacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
    |||||||  ||||||||||||||||| || || ||| ||| |||||| || || | |||||||||||||||||    
T  285179 atacctaatgtcttaaggttttggatcaaaatatggcgtcgatctcatttgtgaggtttctcttagccaaatg 285251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 68 - 290
Target Start/End: Original strand, 1275 - 1499
Alignment:
Q  68 tcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatga 167  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  1275 tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatga 1374  T
Q  168 agatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aagtcattacaggctccctcggagctccaatcattatgataaattg 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  |||||  ||||||||| || ||||||| |||||| |||||||||||||||||     
T  1375 agatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgattcaagtcattatagactccctcagagctctaatcattatgataaatta 1474  T
Q  266 ttgtcttagtttttggttgtccttt 290  Q
    |||||||| ||||||||||||||||    
T  1475 ttgtcttaatttttggttgtccttt 1499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 68 - 290
Target Start/End: Complemental strand, 796 - 572
Alignment:
Q  68 tcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatga 167  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  796 tcatttgtgagtaaaacttctacattggatgcaagactatatattgtgcaacatataagttaaatgacaaatatatctaaagtcttaaggttttggatga 697  T
Q  168 agatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat--aagtcattacaggctccctcggagctccaatcattatgataaattg 265  Q
    ||||||||||||||||||||||||||| |||||||||||||||||  |||||  ||||||||| || ||||||| |||||| |||||||||||||||||     
T  696 agatgtggtgtcaatctcacttatggggtttctcttagccaaatgtgatgattcaagtcattatagactccctcagagctctaatcattatgataaatta 597  T
Q  266 ttgtcttagtttttggttgtccttt 290  Q
    |||||||| ||||||||||||||||    
T  596 ttgtcttaatttttggttgtccttt 572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 6466882 - 6467158
Alignment:
Q  17 acatatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagc 116  Q
    ||||||||| |||  |||||||||| | |||||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| |||    
T  6466882 acatatcatagacatagagaatctcgcccttaagggtgagatgataatgtgtcatttatgagtaaaacttctacattggatccaagagtatatattgagc 6466981  T
Q  117 aacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaat 216  Q
    || |||||| | |||||||||||||| |||  |||||||| ||||||||| ||||||||||||||||||||||||  | ||||||||| ||||||   ||    
T  6466982 aagatataaatgaaatgacaaatataactaatgtcttaagtttttggatggagatgtggtgtcaatctcacttatcaggtttctcttatccaaatatgat 6467081  T
Q  217 gat--aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctttg 291  Q
    |||  ||||||||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||| ||| |||||    
T  6467082 gatccaagtcattacaggatccctcggagctccaaatattatgataaattgttatcttagtttttggatgttctttg 6467158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 45661111 - 45661269
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||| |||    
T  45661111 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattt 45661210  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    || ||||| |||| |||||||||||| ||||||| |||||||||| |||||| ||||||    
T  45661211 tgaatgaaaatgtagtgtcaatctcatttatggggtttctcttagacaaatgtaatgat 45661269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 293
Target Start/End: Original strand, 20442863 - 20442936
Alignment:
Q  220 aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctttgct 293  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  20442863 aagtcattacaggctcccttagagctccaatcattatgataaactgttgtcttaattttcggttgtcctttgct 20442936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 5788192 - 5788011
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| |||| |||| ||| |||||||||||||| | |||||||    
T  5788192 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 5788093  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    ||||||  | |||||||||||||||  |  ||||||| ||| ||| | || |||||  |||||||| | |||||||||||||    
T  5788092 atatactcaaagtcttaaggttttgagtttagatgtgatgtgaattttacgtatggagtttctcttggtcaaatgcaatgat 5788011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 45662556 - 45662713
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||| |||||| ||||||| | ||| | ||||||| ||  |||||||| |||    
T  45662556 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacgtaatgtcttaagattt 45662655  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    || ||||||||||||||||||||||| || |||| |||||||||  |||||| ||||||    
T  45662656 tgaatgaagatgtggtgtcaatctcaattgtggg-tttctcttaaacaaatgtaatgat 45662713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 14872722 - 14872873
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  14872722 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 14872821  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    ||||||  || | ||||||||||||||||||||||||| | |||||||||||    
T  14872822 ttaaggagttaggtgaagatgtggtgtcaatctcacttgtcggatttctctt 14872873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 45054155 - 45053988
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||| | ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||||| | ||    |||||||||   |||    
T  45054155 gagagaagttaatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataagtgagatattcaatatacctgatgtc 45054056  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    ||||| ||||| ||||||||||||||||||||||| || |||| |||| ||||| |||||| ||||||    
T  45054055 ttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttcacttagacaaatgtaatgat 45053988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 41752974 - 41752905
Alignment:
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 207  Q
    |||||||||  ||||||||||||||| | || ||||||||||||||||| |||||||| |||||||||||    
T  41752974 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttatgggaattctcttagcc 41752905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 41754098 - 41753953
Alignment:
Q  42 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 141  Q
    |||||| ||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| |||||||||||||| | ||||| |||||    
T  41754098 acacttgagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataagtgagatgactaatat 41753999  T
Q  142 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 187  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  41753998 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 41753953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 36720074 - 36720205
Alignment:
Q  53 agagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtct 152  Q
    ||||||| ||||||||||  ||||||| ||| ||||||| ||  ||||| | ||||  || |||||||||||||| | ||||   |||||||||  ||||    
T  36720074 agagatgttaatgtgtcaagtgtgagttaaaattctacaatgtgtgcaataatatatgttgagcaacatataagtgagatgatccatatacctaatgtct 36720173  T
Q  153 taaggttttggatgaagatgtggtgtcaatct 184  Q
     |||  ||||| |||||||||| |||||||||    
T  36720174 gaagactttgggtgaagatgtgatgtcaatct 36720205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 25546950 - 25546996
Alignment:
Q  57 atggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 103  Q
    ||||||||||||||  ||||||| ||| |||||||||||||||||||    
T  25546950 atggtaatgtgtcaaatgtgagttaaagttctacattggatgcaaga 25546996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 39403418 - 39403381
Alignment:
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  39403418 ttaatgttttggatgaacatgtggtgtcaatctcactt 39403381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 14873425 - 14873489
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaag 102  Q
    ||||||||||| |||||||||| ||| |||||| |||||| | ||| ||| | ||||||||||||    
T  14873425 tctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagttccaaattggatgcaag 14873489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 202
Target Start/End: Complemental strand, 45058530 - 45058390
Alignment:
Q  63 atgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtctta-aggtttt 161  Q
    ||||||||| |||  || |||||||||||||||| |||| | |||| ||| || |||||  |||| | ||| | ||||||| ||  |||||  |||||||    
T  45058530 atgtgtcatgtgtcggttaaacttctacattggaagcaaaagtatatattgagaaacatgaaagtgagatggccaatatacataatgtctttcaggtttt 45058431  T
Q  162 ggatgaagatgtggtgtcaatctcacttatgggatttctct 202  Q
    |  |||||||||| ||||||||||| || |||| |||||||    
T  45058430 gagtgaagatgtgatgtcaatctcatttttggggtttctct 45058390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 180
Target Start/End: Original strand, 45275944 - 45276089
Alignment:
Q  33 gagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaat 132  Q
    |||| ||||||||||| |  ||||||  ||||||||||| ||||| |||||  |||||||| ||||||||| || | ||| | |||| | ||||| | ||    
T  45275944 gagagtctcacacttaggcaagagatattaatgtgtcatgtgtgaataaaatatctacatttgatgcaagagtagacattaaacaacgtgtaagtgagat 45276043  T
Q  133 gacaaatatacctagagtcttaaggttttggatgaagatgtggtgtca 180  Q
    ||| ||||||| |  | | |||||||||||  ||||||| ||||||||    
T  45276044 gaccaatatactt--aatgttaaggttttgagtgaagatatggtgtca 45276089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 5099 - 5279
Alignment:
Q  31 cagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaa 130  Q
    |||||| ||||||| ||||| ||||||||  ||||||||||  |||||| |||| |||||||||||||||||| |||| ||| | |||||||||||| ||    
T  5099 cagagagtctcacaattaagcgagagatgagaatgtgtcatgcgtgagttaaacatctacattggatgcaagaatatacattgaacaacatataagtgaa 5198  T
Q  131 atgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
     |||| ||||||||||  ||||||   |||||| |||| ||||||||||||| ||| || | || |||||||||| ||||||    
T  5199 gtgaccaatatacctaatgtcttactattttgggtgaatatgtggtgtcaatatcatttgttgg-tttctcttagtcaaatg 5279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 36 - 205
Target Start/End: Complemental strand, 31089639 - 31089469
Alignment:
Q  36 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgac 135  Q
    |||||||||||||||||||| ||| ||||||||||| ||| ||| ||| |||||||||||||| |||| ||||  || |||||||||||||  | ||||     
T  31089639 aatctcacacttaagggagatatgttaatgtgtcatatgtaagttaaatttctacattggatgaaagagtatattttgagcaacatataagcgagatgat 31089540  T
Q  136 aaatatacctagagtcttaag-gttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 205  Q
     ||||||||||  |||| |||  |||| | ||| ||||||||||||||||||||| || | ||||||||||    
T  31089539 caatatacctaatgtctgaagtttttttggtgaggatgtggtgtcaatctcacttgtgaggtttctcttag 31089469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 203
Target Start/End: Original strand, 16852891 - 16853042
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  16852891 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 16852990  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    ||||||||||    |||||||||||||||||||||| | | |||||||||||    
T  16852991 ttaaggttttaagggaagatgtggtgtcaatctcacatgtcggatttctctt 16853042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 27342183 - 27342355
Alignment:
Q  36 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaat---tcagcaacatataagttaaat 132  Q
    ||||||||| |||||||||||||  | ||||  ||| ||||||| ||||||||||||||||||||| | |||| ||   |||| |||| ||| |  | ||    
T  27342183 aatctcacatttaagggagagatatttatgttccatgtgtgagttaaacttctacattggatgcaatagtatatattgatcagtaacaaatacgcgagat 27342282  T
Q  133 gacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttag 205  Q
     | ||||||||||| ||||||||| |||| |  ||||||||| | ||||| |||||| | || ||||||||||    
T  27342283 aaaaaatatacctaaagtcttaagattttaggcgaagatgtgatctcaatttcacttgtagggtttctcttag 27342355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 11976911 - 11976959
Alignment:
Q  131 atgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtc 179  Q
    |||||| |||||| ||| |||||||||||||||||||||||||| ||||    
T  11976911 atgacacatatacatagtgtcttaaggttttggatgaagatgtgttgtc 11976959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 43387179 - 43387042
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||| ||||||||||  ||||||| ||| ||  |||||| |||||| | || |  || || ||||||||||| |||||||   |||| |||  |||    
T  43387179 gagagatgttaatgtgtcaagtgtgagttaaaattacacattgaatgcaatagtagatgttgagaaacatataagtgaaatgactcgtatatctaatgtc 43387080  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    ||||| |||||| ||||| |||| ||||||||| ||||    
T  43387079 ttaagattttgggtgaagttgtgatgtcaatcttactt 43387042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 43215625 - 43215467
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||| |||||    
T  43215625 taatgtgacatgtgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttacggttt 43215526  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    || ||||| |||| |||||||||||| ||||||| || ||||||| |||||| ||||||    
T  43215525 tgaatgaaaatgtagtgtcaatctcatttatggggttcctcttagacaaatgtaatgat 43215467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 50 - 203
Target Start/End: Complemental strand, 18431645 - 18431492
Alignment:
Q  50 gggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagag 149  Q
    |||||||||| ||||||||||| ||||||| |||||||||  || ||||||||| |||| ||| |||||||||||  | | ||||| ||||||||||  |    
T  18431645 gggagagatgttaatgtgtcatgtgtgagttaaacttctaattttgatgcaagagtatatattgagcaacatatatttgagatgaccaatatacctaatg 18431546  T
Q  150 tcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    |||| ||||||  |||  |||||||||||| |||| |||| |||| ||||||||    
T  18431545 tcttcaggtttgagatagagatgtggtgtccatcttacttgtggggtttctctt 18431492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 204
Target Start/End: Original strand, 45528202 - 45528345
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    |||||| |||| | ||||| ||| ||| || ||||||||| || |||| ||| |||||||||||| | | ||||||||||||||||  |||||||| |||    
T  45528202 taatgtatcatgtatgagttaaatttcaacgttggatgcacgagtatatattgagcaacatataaatgagatgacaaatatacctaatgtcttaagattt 45528301  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    ||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  45528302 tgggtgaagatttggtgtgtatctcacttgtggggtttctctta 45528345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 15276084 - 15275927
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||  |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  15276084 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15275985  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
     | ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  15275984 cgaatgaagatgtggtgtcaatctcatttgtggg-tttctcttagacaaatgtaatgat 15275927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 219
Target Start/End: Complemental strand, 15456453 - 15456296
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||  |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  15456453 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatatcgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 15456354  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
     | ||||||||||||||||||||||| || |||| |||||||||| |||||| ||||||    
T  15456353 cgaatgaagatgtggtgtcaatctcatttgtggg-tttctcttagacaaatgtaatgat 15456296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 187
Target Start/End: Original strand, 38291757 - 38291906
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||||||||||||||||| ||  | ||||| || ||| || | ||| ||| ||||| ||||||||| |  | ||| || ||||||||||| |||| |  |    
T  38291757 tctcacacttaagggagatatattgatgtggcaattgcgacttaaagttccacatttgatgcaagagtggacattgagaaacatataagtgaaattatca 38291856  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 187  Q
    |||||||||  ||||||||||||||||||||||||| |||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaatctcac 38291906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 15276900 - 15276763
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  15276900 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15276801  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||||||| | |||||||||||||||||||||||||    
T  15276800 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15276763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 189
Target Start/End: Complemental strand, 15457269 - 15457132
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  ||     
T  15457269 gagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgactaatatacataatgta 15457170  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||||||| | |||||||||||||||||||||||||    
T  15457169 ttaaggttttaggtgaagatgtggtgtcaatctcactt 15457132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 760653 - 760805
Alignment:
Q  30 gcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagtta 129  Q
    ||||||| ||||||| ||||| ||||||||  |||| ||||| | ||||| |||| |||||||| ||||||||| ||||  || | |||||||| ||| |    
T  760653 gcagagagtctcacaattaagcgagagatgtgaatgcgtcatgtatgagttaaacatctacatttgatgcaagaatatactttaaacaacatatcagtga 760752  T
Q  130 aatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaat 182  Q
    | |||| ||||||||||  ||||||   ||||| ||||| |||||||||||||    
T  760753 agtgactaatatacctaatgtcttactattttgaatgaatatgtggtgtcaat 760805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 5685854 - 5685930
Alignment:
Q  19 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattgg 95  Q
    ||||||| |||  |||||||||||||||||| ||||||||| ||||||||||| ||||||| | | |||||||||||    
T  5685854 atatcatagacatagagaatctcacacttaaaggagagatgttaatgtgtcatgtgtgagttataattctacattgg 5685930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 19263374 - 19263301
Alignment:
Q  116 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    ||||| |||||| | |||||  |||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  19263374 caacaaataagtgatatgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 19263301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 23140604 - 23140535
Alignment:
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 207  Q
    |||||||||  ||||||||||||||| | || ||||||||||||| ||| |||||||| |||||||||||    
T  23140604 atatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatttcatttatgggaattctcttagcc 23140535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 38291332 - 38291385
Alignment:
Q  159 tttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
    |||||||| ||||||||||||||||| | |||||||||||||||||| ||||||    
T  38291332 tttggatgcagatgtggtgtcaatcttatttatgggatttctcttagtcaaatg 38291385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 45247753 - 45247835
Alignment:
Q  19 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaa 101  Q
    ||||||| | |||||||| |||||||||||||||||||||  |||| |||||  ||||||| ||| |||||| ||| ||||||    
T  45247753 atatcatagccgcagagagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttctacgttgaatgcaa 45247835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 14715279 - 14715336
Alignment:
Q  46 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 103  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| |||||||||    
T  14715279 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaaga 14715336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 23141733 - 23141588
Alignment:
Q  42 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 141  Q
    |||||||||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| ||||||||| |||| | ||||| |||||    
T  23141733 acacttaagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatacaagtgagatgactaatat 23141634  T
Q  142 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 187  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  23141633 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 23141588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 13758981 - 13759049
Alignment:
Q  139 tatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 207  Q
    ||||||||  ||||||||||||||| | || ||||||||||||||||| || ||||  |||||||||||    
T  13758981 tatacctaatgtcttaaggttttgggtcaaaatgtggtgtcaatctcatttgtggggattctcttagcc 13759049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 38291216 - 38291271
Alignment:
Q  37 atctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 92  Q
    ||||||||||||||||||||||| |||||||  || ||||| | ||||||||||||    
T  38291216 atctcacacttaagggagagatgttaatgtgctatgtgtgatttaaacttctacat 38291271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 20874610 - 20874668
Alignment:
Q  131 atgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||| ||||| |||  || ||||||||||||||||| |||||| |||||||||||||    
T  20874610 atgacatatatatctaatgttttaaggttttggatgaaaatgtggcgtcaatctcactt 20874668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 36990271 - 36990444
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    ||||||| |||||  |||||||  |||||||||   |||| | |||| |||||||| || |||||| || | ||| | |||||| ||||| | ||||| |    
T  36990271 tctcacatttaagctagagatgtaaatgtgtcacgcgtgaattaaacatctacattagacgcaagagtagacattaaacaacatgtaagtgagatgacca 36990370  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
    |||||  ||  ||||||||||||||  |||| ||||||||||||| ||| || | || |||||||||| ||||||    
T  36990371 atatatgtaatgtcttaaggttttgagtgaatatgtggtgtcaatatcatttgttgg-tttctcttagtcaaatg 36990444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 42797151 - 42797046
Alignment:
Q  114 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgc 213  Q
    |||||||||||||| | ||||| |||||  | |  |||||||||||||| ||  ||||||||||| ||| |||| | |||| ||| |||| | |||||||    
T  42797151 agcaacatataagtgagatgactaatatttccaatgtcttaaggttttgaatttagatgtggtgtgaatttcacgtgtggggtttttcttggtcaaatgc 42797052  T
Q  214 aatgat 219  Q
    ||||||    
T  42797051 aatgat 42797046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 23686596 - 23686656
Alignment:
Q  29 cgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttcta 89  Q
    |||||||| | |||||||||||||||||||| |||| |||||  ||||||| ||| |||||    
T  23686596 cgcagagagtatcacacttaagggagagatgttaatatgtcaagtgtgagttaaagttcta 23686656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 32916816 - 32916856
Alignment:
Q  30 gcagagaatctcacacttaagggagagatggtaatgtgtca 70  Q
    ||||||| ||||||| |||||||||||||| ||||||||||    
T  32916816 gcagagagtctcacatttaagggagagatgctaatgtgtca 32916856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 24360925 - 24360852
Alignment:
Q  220 aagtcattacaggctccctcggagctccaatcattatgataaattgttgtcttagtttttggttgtcctttgct 293  Q
    |||||||||||||||||||  |||||||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  24360925 aagtcattacaggctcccttagagctccaatcattatgataaactgttgtcttaattttcggttgtcctttgct 24360852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 52 - 194
Target Start/End: Complemental strand, 11554470 - 11554328
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||| ||||||||||| ||||||| || ||||||||||||||||| || ||    || | |||||||| ||| | |||||  || ||||||  |||    
T  11554470 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtacctaatgtc 11554371  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatggg 194  Q
    |||||||||||| | || ||||||||||||||||| |||||||    
T  11554370 ttaaggttttgggtcaaaatgtggtgtcaatctcatttatggg 11554328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 4852808 - 4852950
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||| ||||||||||| ||||||| || ||||||||||||||||| || ||    || | |||||||| ||| | |||||  || |||| |  |||    
T  4852808 gagagatgttaatgtgtcatgtgtgagttaaccttctacattggatgcaggagtagttgttaaacaacatattagtgagatgacccatgtaccgaatgtc 4852907  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatggg 194  Q
    ||||| |||||||| || ||||||||||||||||| |||||||    
T  4852908 ttaagattttggatcaaaatgtggtgtcaatctcatttatggg 4852950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 186
Target Start/End: Original strand, 2970421 - 2970491
Alignment:
Q  116 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctca 186  Q
    |||||||||||| |||||||| ||||||||   |||||||  |||||||| ||||||||||||||||||||    
T  2970421 caacatataagtgaaatgacacatatacctcatgtcttaaaattttggataaagatgtggtgtcaatctca 2970491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 187
Target Start/End: Complemental strand, 18090013 - 18089937
Alignment:
Q  111 ttcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 187  Q
    ||||| ||||||||| | | ||||  ||||||||||  | ||||||||||||| |||||||||||||||||||||||    
T  18090013 ttcagaaacatataattgagatgaacaatatacctaatgccttaaggttttgggtgaagatgtggtgtcaatctcac 18089937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 203
Target Start/End: Complemental strand, 26596824 - 26596659
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    ||||||| || ||||||||||| | |||| |||| ||||| | ||||||||||||||| ||||| |  ||| ||| || ||||  ||||  | |||| ||    
T  26596824 tctcacatttcagggagagatgtttatgtatcatgtgtgacttaaacttctacattggctgcaatagaatatattgagtaacaattaagcgagatgaaaa 26596725  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    |||||||||  ||||||||  ||| |  ||||||||| | ||||| |||||| | |||||||||||    
T  26596724 atatacctaatgtcttaagagtttaggcgaagatgtgatctcaatttcacttgtaggatttctctt 26596659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 34515220 - 34515068
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtctta-aggtt 159  Q
    ||||||||||| ||| ||| |||||||||||||| | |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  |||||  |||||    
T  34515220 taatgtgtcatgtgtcagttaaacttctacattgaaagcaaaagtatatattgagaaacatgaatgtgagatgaccaatatacataatgtctttcaggtt 34515121  T
Q  160 ttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
    |||  |||||||||| ||||||||||| || |||| |||||||| | ||||||    
T  34515120 ttgagtgaagatgtgatgtcaatctcatttttggggtttctcttggtcaaatg 34515068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 184
Target Start/End: Original strand, 24397910 - 24398047
Alignment:
Q  46 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacct 145  Q
    ||||| |||||||  ||||||||||| ||||||| || |||||||||| || | |  | |||| ||| |||||||||||| | | ||||| |||||| ||    
T  24397910 ttaagagagagatattaatgtgtcatgtgtgagttaa-cttctacattagacgaattagtatatattgagcaacatataaatgagatgactaatatatct 24398008  T
Q  146 agagtcttaaggttttggatgaagatgtggtgtcaatct 184  Q
    |  ||| |||| |||||| |||||| ||| |||||||||    
T  24398009 aatgtcgtaagattttgggtgaagaggtgatgtcaatct 24398047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 26595962 - 26595896
Alignment:
Q  117 aacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatc 183  Q
    ||||||||||| | ||||| |||  |||||  ||||||||||||||||||| |||||| ||||||||    
T  26595962 aacatataagtaagatgaccaatgcacctaatgtcttaaggttttggatgatgatgtgatgtcaatc 26595896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 1599831 - 1599976
Alignment:
Q  42 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatat 141  Q
    |||||| ||||| ||| | ||||||||||| ||| | | |||||| ||||||  ||| |||| || | ||| |||||||||||| | | ||||| |||||    
T  1599831 acacttgagggaaagacgttaatgtgtcatgtgtcatttaaacttatacattatatgtaagagtagatattgagcaacatataaatgagatgactaatat 1599930  T
Q  142 acctagagtcttaaggttttggatgaagatgtggtgtcaatctcac 187  Q
    | | |  |||||||||||||| ||  ||||||||||| ||| ||||    
T  1599931 atccaatgtcttaaggttttgaatttagatgtggtgtgaatttcac 1599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 29214299 - 29214195
Alignment:
Q  116 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaa 215  Q
    ||||||| |||| | |||||  |||||||||  ||||||||  |||||||||||||||| |   ||||||||||||| | || ||||||||  |||| ||    
T  29214299 caacatacaagtgagatgactcatatacctattgtcttaagactttggatgaagatgtgataataatctcacttatgtggttgctcttagcgtaatgtaa 29214200  T
Q  216 tgata 220  Q
    |||||    
T  29214199 tgata 29214195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 12125580 - 12125429
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||| |||||||||||| |||||| | |||||||| || ||||||||| |||| ||| ||||||||||| || | ||||| ||||||||||  |||    
T  12125580 gagagatgttaatgtgtcattagtgagttacacttctacttttgatgcaagagtatatattgagcaacatatatgtgagatgaccaatatacctaatgtc 12125481  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    || | ||||  |||  |||||||||||| |||| |||| |||| ||||||||    
T  12125480 ttcatgtttgagatagagatgtggtgtctatcttacttgtggggtttctctt 12125429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 9265297 - 9265443
Alignment:
Q  73 tgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatg 172  Q
    ||||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||||||||| |||||  ||    
T  9265297 tgtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaaggttttgaatgaaactg 9265396  T
Q  173 tggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    | |||||||||||| |||| || |||||||||| |||||| ||||||    
T  9265397 tagtgtcaatctcatttatagggtttctcttagacaaatgtaatgat 9265443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 219
Target Start/End: Original strand, 9266725 - 9266882
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| |||| |||| || | ||| |||||| ||||||| | ||| | ||||||||||  ||||||||||||    
T  9266725 taatgtgacatgtgtgagttaaccttttacatttgatgtaagagtaaatattgagcaacgtataagtaagatgtccaatatacctaatgtcttaaggttt 9266824  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    || ||||| ||||||||||||||||| ||  ||| |||||||||| ||||| |||||||    
T  9266825 tgaatgaaaatgtggtgtcaatctcatttgcggg-tttctcttagacaaatacaatgat 9266882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 20934335 - 20934184
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||||||| ||||||||||||| | |||| |||| ||||| | |||||||||||||| |||||| | |||| ||| |||||||||||||  | | ||  |    
T  20934335 tctcacacataagggagagatgtttatgtttcatgtgtgacttaaacttctacattgtatgcaataatatatattgagcaacatataagcgagaagaaca 20934236  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||||||  | |||||| ||||   |||| ||||||||||||||||||||    
T  20934235 atatacctaatgccttaagattttacgtgaatatgtggtgtcaatctcactt 20934184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 6087313 - 6087136
Alignment:
Q  27 gacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataag 126  Q
    |||||| ||| ||||||| ||||||||| |||| | ||||||||| | | ||| |||||||||||||  |||||| | |||| |   |||||||||||||    
T  6087313 gacgcaaagactctcacatttaagggagcgatgttgatgtgtcatgtttaagttaaacttctacatttcatgcaatagtatataactagcaacatataag 6087214  T
Q  127 ttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    | | || |||| ||||||||   ||| |||||||| | |||| |||| |||| ||||||| || |||| |||||||||    
T  6087213 tgagattacaagtatacctaatatctcaaggttttaggtgaaaatgtagtgttaatctcaattgtggggtttctctta 6087136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 38 - 203
Target Start/End: Original strand, 6436831 - 6436996
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||||||| |||  |||| ||| ||||||||||| | | ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| |    
T  6436831 tctcacacgtaacagagatatgttaatgtgtcatgtctaagttaaacttctacattggaagcaaaagtatatattgagaaacatgaatgtgagatgacta 6436930  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    |||||| ||  || ||||||| || | ||||||||||| ||||||||||||| | |||||||||||    
T  6436931 atatacataatgtattaaggtgttaggtgaagatgtggcgtcaatctcacttgtcggatttctctt 6436996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 203
Target Start/End: Original strand, 9262779 - 9262921
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||| || |||||  | || | ||||| ||||||| ||  || |||||||||    
T  9262779 taatgtgtcatgtgtaagttaaacttctacattggaagcaaaaatatatattgagaaacatgaatgtgagatgactaatatacataatgtattaaggttt 9262878  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctctt 203  Q
    | | |||||||||| | |||||||||| | | |||||||||||    
T  9262879 taggtgaagatgtgctctcaatctcacatgtcggatttctctt 9262921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 50419 - 50492
Alignment:
Q  116 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    ||||| |||||| | |||||  |||||||||  |||||||||||| ||||| ||||||||||||||||||||||    
T  50419 caacaaataagtgatatgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaatctcactt 50492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 211
Target Start/End: Complemental strand, 14240556 - 14240497
Alignment:
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaat 211  Q
    ||||| ||||| ||||||||||||||||||||||| || |||| |||||||||| |||||    
T  14240556 ttaagattttgaatgaagatgtggtgtcaatctcatttgtggggtttctcttagacaaat 14240497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 108
Target Start/End: Original strand, 431968 - 432031
Alignment:
Q  45 cttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactata 108  Q
    ||||| ||||||||  |||||||||| |||||||| ||| ||| ||||||||||||||| ||||    
T  431968 cttaatggagagatattaatgtgtcaattgtgagttaaaattcgacattggatgcaagagtata 432031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 101
Target Start/End: Complemental strand, 25225417 - 25225358
Alignment:
Q  42 acacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaa 101  Q
    ||||||||||||| |||| |||| |||||||||||||| ||| ||| |||||| ||||||    
T  25225417 acacttaagggagggatgttaatatgtcatttgtgagttaaagttccacattgaatgcaa 25225358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 9263473 - 9263537
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaag 102  Q
    ||||||||||| |||||||||| ||| |||||| |||||| | ||| ||| | ||||||||||||    
T  9263473 tctcacacttatgggagagatgttaaagtgtcaattgtgactcaaagttccaaattggatgcaag 9263537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 10973326 - 10973269
Alignment:
Q  18 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtga 77  Q
    |||||||| |||  ||||| |||||||||||||  ||||||| |||||||||||||||||    
T  10973326 catatcatagacatagagagtctcacacttaag--agagatgttaatgtgtcatttgtga 10973269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 39187289 - 39187349
Alignment:
Q  29 cgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttcta 89  Q
    |||||||| |||||||||||||||||||||  |||| |||||  ||||||| ||| |||||    
T  39187289 cgcagagagtctcacacttaagggagagattttaatatgtcaagtgtgagttaaagttcta 39187349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 219
Target Start/End: Complemental strand, 32565 - 32384
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||| ||||| ||||| ||| | ||||||||||  ||||| | |||||||||||||  ||| |||| |||| ||| |||||||||||||| | |||||||    
T  32565 tctcgcacttgagggaaagacgttaatgtgtcacgtgtgatttaaacttctacattatatgtaagagtatatattgagcaacatataagtgagatgacaa 32466  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    ||||||  | |||||||||||||||  |  ||||||| ||| ||| | || |||||  |||||||| | |||||||||||||    
T  32465 atatactcaaagtcttaaggttttgagtttagatgtgatgtgaattttacgtatggagtttctcttggtcaaatgcaatgat 32384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 17474751 - 17474599
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| ||||||||||||   ||    
T  17474751 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatc 17474652  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17474651 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17474599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 17578463 - 17578615
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| ||||||||||||   ||    
T  17578463 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggcaaatatacctaatatc 17578562  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17578563 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17578615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 6202346 - 6202483
Alignment:
Q  74 gtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgt 173  Q
    |||||| || ||| |||||| ||||||||| || | ||| |||||||||||||| | ||| | ||||||| ||  |||||||| ||||| ||||| |||     
T  6202346 gtgagttaaccttttacatttgatgcaagagtaaatattaagcaacatataagtgagatgtccaatatacttaatgtcttaagattttgaatgaaaatgc 6202445  T
Q  174 ggtgtcaatctcacttatgggatttctcttagccaaat 211  Q
     |||||||||||| |||| || |||||||||| |||||    
T  6202446 agtgtcaatctcatttatagggtttctcttagacaaat 6202483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 204
Target Start/End: Complemental strand, 17510235 - 17510083
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| | ||||||||||   ||    
T  17510235 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatc 17510136  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17510135 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17510083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 204
Target Start/End: Original strand, 17542979 - 17543131
Alignment:
Q  52 gagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtc 151  Q
    |||||||  ||||| ||| | ||||||| |||||||||| || ||||||||| |||| ||| | ||||||||  || | ||| | ||||||||||   ||    
T  17542979 gagagatattaatgcgtcgtgtgtgagttaaacttctacttttgatgcaagagtatatattgaacaacatatttgtgagatggccaatatacctaatatc 17543078  T
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    || |||||| ||||| |||||||||||| |||| |||| |||| |||||||||    
T  17543079 ttcaggtttcggatggagatgtggtgtccatcttacttgtggggtttctctta 17543131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 42079060 - 42078967
Alignment:
Q  36 aatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcaagactataaattcagcaacatataagt 127  Q
    ||||||||| |||||| ||||||| ||||||||||| ||||||| |||||||  |||||| ||||||||| || | ||| |||||||| |||||    
T  42079060 aatctcacagttaaggaagagatgttaatgtgtcatgtgtgagttaaacttctatacatttgatgcaagagtagatattgagcaacatgtaagt 42078967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 210
Target Start/End: Complemental strand, 38788213 - 38788064
Alignment:
Q  61 taatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttt 160  Q
    ||||||| ||| ||||||| || ||| |||||| || |||| | || | ||| |||||||||||| | | ||| | |||||||||   |||||||  |||    
T  38788213 taatgtgacatgtgtgagttaaccttttacatttgacgcaaaagtaaatattgagcaacatataactgagatgtccaatatacctgatgtcttaaaattt 38788114  T
Q  161 tggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaa 210  Q
    || ||||||||||||||||||||||| || |||  |||||||||| ||||    
T  38788113 tgaatgaagatgtggtgtcaatctcatttgtggagtttctcttagacaaa 38788064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 15464457 - 15464396
Alignment:
Q  18 catatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagt 79  Q
    |||||||| |||  ||||| |||||||||||||| ||||||| ||||||||||| |||||||    
T  15464457 catatcatagacatagagagtctcacacttaaggtagagatgctaatgtgtcatgtgtgagt 15464396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 48553312 - 48553243
Alignment:
Q  150 tcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgcaatgat 219  Q
    |||||||||||| ||||||||| || ||  |||||||||| ||||||||||| || |||||||| |||||    
T  48553312 tcttaaggtttttgatgaagatatgttgataatctcacttgtgggatttctcgtaaccaaatgcgatgat 48553243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 207
Target Start/End: Original strand, 24708450 - 24708597
Alignment:
Q  60 gtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggtt 159  Q
    ||||||||||| || ||||| ||| || ||||||| ||| |||| ||||  || |||||||||||||| |||| || ||||||||||     |||||  |    
T  24708450 gtaatgtgtcaattatgagttaaaattatacattgtatgtaagagtatatgttgagcaacatataagtaaaataaccaatatacctaatactttaagact 24708549  T
Q  160 ttggatgaagatgtggtgtcaatctcacttatgggatttctcttagcc 207  Q
    || |||||||||||| | | || ||||||| || | ||||||||||||    
T  24708550 tttgatgaagatgtgatttgaaactcacttgtgtggtttctcttagcc 24708597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 181
Target Start/End: Original strand, 27938832 - 27938875
Alignment:
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaa 181  Q
    ||||||||| || |||||||||||||||| ||||||||||||||    
T  27938832 atatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 6188756 - 6188833
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcag 115  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||||||    
T  6188756 tctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattcag 6188833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 6195272 - 6195349
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcag 115  Q
    |||||||| |||  |||| ||| ||||||||||| ||| ||| |||||||||||||||| |||| | |||| ||||||    
T  6195272 tctcacacgtaacagagatatgttaatgtgtcatgtgtaagttaaacttctacattggaagcaaaagtatatattcag 6195349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 45678 - 45583
Alignment:
Q  109 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  45678 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctctta 45583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 153109 - 153204
Alignment:
Q  109 aattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    |||| |||||||||||| | | ||||||||||||||||  |||||||| |||||| ||||||| ||||||  ||||||||| |||| |||||||||    
T  153109 aattaagcaacatataaatgagatgacaaatatacctaatgtcttaagattttgggtgaagatttggtgtttatctcacttgtggggtttctctta 153204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 12247 - 12352
Alignment:
Q  114 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatgc 213  Q
    |||||||||||||| | ||| | |||||||||   |||||||| ||||| |||||||||||||| |||||||| |  |||| |||||||||| ||||||     
T  12247 agcaacatataagtgagatgtccaatatacctgatgtcttaagattttgaatgaagatgtggtggcaatctcattcgtggggtttctcttagacaaatgt 12346  T
Q  214 aatgat 219  Q
    ||||||    
T  12347 aatgat 12352  T

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Target: scaffold0050 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 114 - 210
Target Start/End: Complemental strand, 10657 - 10561
Alignment:
Q  114 agcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaa 210  Q
    |||||||||||||| | ||||| || ||||| |  ||| |||| |||||||||||||||| ||||||||||||||| | || |||||||||| ||||    
T  10657 agcaacatataagtgagatgacgaacataccaaatgtcctaagtttttggatgaagatgtagtgtcaatctcacttgtagggtttctcttagacaaa 10561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 2 - 128
Alignment:
Q  63 atgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttg 162  Q
    |||| |||| ||||||| |||||||||||||| |||||| | |||| ||| |||||||||||||  | | ||  ||||||||||  | |||||| ||||     
T  2 atgtttcatgtgtgagttaaacttctacattgtatgcaatagtatatattgagcaacatataagcgagaagaacaatatacctaatgccttaagatttta 101  T
Q  163 gatgaagatgtggtgtcaatctcactt 189  Q
      | |||||||||||||||||||||||    
T  102 cgtaaagatgtggtgtcaatctcactt 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 12652 - 12561
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttc--tacattggatgcaagactataaattcagcaacatataagt 127  Q
    |||||||||||||| ||||||| ||||||||||| ||||||| ||| |||  |||||| ||||||||| || | ||| |||||||| |||||    
T  12652 tctcacacttaaggaagagatgttaatgtgtcatgtgtgagttaaatttctatacattagatgcaagagtaaatattgagcaacatgtaagt 12561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 30831 - 30970
Alignment:
Q  44 acttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatac 143  Q
    ||||||| |||||||  ||||||||||| ||||||| || |||||||||| | ||| | | |||| ||| |||||||||||| | | ||||| ||||||     
T  30831 acttaagagagagatattaatgtgtcatgtgtgagttaa-cttctacattaggtgcgatagtatatattgagcaacatataaatgagatgactaatatat 30929  T
Q  144 ctagagtcttaaggttttggatgaagatgtggtgtcaatct 184  Q
    |||  ||| |||| |||||| |||||| ||| |||||||||    
T  30930 ctaatgtcataagattttgggtgaagaggtgatgtcaatct 30970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 46321 - 46261
Alignment:
Q  152 ttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
    |||||||||| ||||| || ||||||||||| |||||||||| ||||||||||| ||||||    
T  46321 ttaaggttttagatgatgaggtggtgtcaatatcacttatggcatttctcttagtcaaatg 46261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 212
Target Start/End: Original strand, 15251 - 15425
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||||||||| ||||||| | | ||||||||||  ||||| | |||||| ||||||  ||| | || || | ||| |||||||||||||| |  |||  |    
T  15251 tctcacacttgagggagaaacgttaatgtgtcaagtgtgatttaaacttttacattatatgtatgagtagatattgagcaacatataagtgagctgatta 15350  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcacttatgggatttctcttagccaaatg 212  Q
    |||||| ||  ||||||| ||||||| |  ||||||||||| ||| |||| | |||| |||||||||| ||||||    
T  15351 atatacttaatgtcttaaagttttgggtttagatgtggtgtgaatttcacatgtggggtttctcttagtcaaatg 15425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 7637 - 7539
Alignment:
Q  88 tacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctca 186  Q
    ||||||||||| |||| || |  || |||||||||||||||| ||||| || |||||||  ||||||||||||    ||||| ||||||||||||||||    
T  7637 tacattggatggaagagtagattttgagcaacatataagttagatgaccaaaatacctaatgtcttaaggtttcatgtgaagttgtggtgtcaatctca 7539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 6540 - 6413
Alignment:
Q  19 atatcatggacgcagagaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaa 118  Q
    |||||| || |||| ||| ||||||| ||||||||||| || |||||| |||  ||||||| ||| ||| | ||||||||||| | || |  || | |||    
T  6540 atatcagggtcgcaaagattctcacaattaagggagaggtgttaatgtatcaaatgtgagttaaagttccatattggatgcaaaaatagatgttgaacaa 6441  T
Q  119 catataagttaaatgacaaatataccta 146  Q
    ||||||||| | ||||| ||||||||||    
T  6440 catataagtgagatgaccaatataccta 6413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 9048715 - 9048753
Alignment:
Q  151 cttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  9048715 cttaagattttggatgaagatgtggtgtcaatctcactt 9048753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 15301554 - 15301611
Alignment:
Q  34 agaatctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacat 92  Q
    ||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||||||||||    
T  15301554 agaatctca-acttaagggagagatgttaacgtgtcatatgtgagttaaacttctacat 15301611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 24541767 - 24541918
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    |||| |||||||| || ||||| | || |||||| ||||||| |||||| ||  |||||||||||| | || | | || || ||||| || | || || |    
T  24541767 tctcccacttaagagaaagatgttgatatgtcatgtgtgagttaaacttttatgttggatgcaagagtgtatactgagaaaaatatacgtgagataacca 24541866  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    |||||||||  || |||||||||||||||||||| || ||| ||| ||||||    
T  24541867 atatacctactgtgttaaggttttggatgaagatatgatgttaatatcactt 24541918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 189
Target Start/End: Complemental strand, 38016026 - 38015875
Alignment:
Q  38 tctcacacttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaa 137  Q
    ||||| |||| | ||||||||| ||||||||||  ||||||| ||| |   |||||| |||||| | || |  || |||||||||||||| | |||||      
T  38016026 tctcatacttgatggagagatgttaatgtgtcaagtgtgagttaaaataacacattgaatgcaatagtagatgttgagcaacatataagtgagatgactc 38015927  T
Q  138 atatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    ||||| |||  | |||||| |||||| ||||| |||| ||||||||||||||    
T  38015926 atatatctaatgacttaagattttgggtgaagttgtgatgtcaatctcactt 38015875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 178
Target Start/End: Complemental strand, 38012936 - 38012839
Alignment:
Q  81 aaacttctacattggatgcaagactataaattcagcaacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgt 178  Q
    |||||||||||||| ||| |||| || | ||| |||||||||||| | ||||||| |||||||| |  || ||| ||||||| ||  |||||||||||    
T  38012936 aaacttctacattgtatgtaagagtagatattgagcaacatataactgaaatgactaatatacccaatgttttatggttttgaatttagatgtggtgt 38012839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 189
Target Start/End: Complemental strand, 258 - 185
Alignment:
Q  116 caacatataagttaaatgacaaatatacctagagtcttaaggttttggatgaagatgtggtgtcaatctcactt 189  Q
    ||||| |||||| | |||||  ||||| |||  |||||||||||| ||||| ||||||||||||||||||||||    
T  258 caacaaataagtgatatgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaatctcactt 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 96008 - 95951
Alignment:
Q  46 ttaagggagagatggtaatgtgtcatttgtgagtaaaacttctacattggatgcaaga 103  Q
    ||||| |||||||| |||||| |||| ||||||| ||||||||||||| |||||||||    
T  96008 ttaagagagagatgttaatgtttcatgtgtgagttaaacttctacatttgatgcaaga 95951  T

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Target: scaffold0051 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 17307 - 17354
Alignment:
Q  30 gcagagaatctcacacttaagggagagatggtaatgtgtcatttgtga 77  Q
    ||||||||||||||||||||| | |||||| ||||||||||| |||||    
T  17307 gcagagaatctcacacttaagagtgagatgttaatgtgtcatatgtga 17354  T

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Target: scaffold1804 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1804
Description:

Target: scaffold1804; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 1034 - 1072
Alignment:
Q  137 aatatacctagagtcttaaggttttggatgaagatgtgg 175  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  1034 aatatacctattgtcttaaggttttggatgaagatgtgg 1072  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Complemental strand, 16054 - 16017
Alignment:
Q  167 aagatgtggtgtcaatctcacttatgggatttctctta 204  Q
    ||||||||||||||||||||||| || |||||||||||    
T  16054 aagatgtggtgtcaatctcacttgtgtgatttctctta 16017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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