View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_low_17 (Length: 238)
Name: NF15457_low_17
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_low_17 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: scaffold0391 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7061 - 7283
Alignment:
| Q |
1 |
ttcgtaagaaccatcattttccattatggaaacctgcgcaaagagttgataacaaaattgctacgttatttctttgtgtggataatatataacctacgtt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7061 |
ttcgtaagaaccatcattttccattatgaaaacctgcgcaaagagttgataacaaaattgctacgttatttctttgtgtggataatatataacctacgtt |
7160 |
T |
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| Q |
101 |
tcgcgcttccattctttcaattctattaataatcctcctacaacagtaattgtaaggtgaatatttttagaataatttagagatttnnnnnnnttacttt |
200 |
Q |
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| T |
7161 |
tcgcgcttccattctttcaattctattaataatcctcctacaacagtaattgtaaggtgaatatttttagaataatttagagatttaaaaaaattacttt |
7260 |
T |
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| Q |
201 |
agcaagaagatagtgtgtttcat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
7261 |
agcaagaagatagtgtgtttcat |
7283 |
T |
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Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 34116596 - 34116764
Alignment:
| Q |
54 |
aaaattgctacgttatttctttgtgtggataa-tatata-acctacgtttcgcgcttccattctttcaattctattaataatcctcctacaacagtaatt |
151 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||||| ||||| |
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| T |
34116596 |
aaaattgctacgttatttctttgtgtggataaatatatatacctatgtttcgcgcttccattctttcaattcta---ataatcttcctacaacaataatt |
34116692 |
T |
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| Q |
152 |
gtaaggtgaatatttttagaataatttagagatttnnnnnnnttactttagcaagaagatagtgtgtttcat |
223 |
Q |
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| T |
34116693 |
gtaaggtgaatattttgagaatattttagtgatttaaaaaaattactttagcaagaagattgtgtgtttcat |
34116764 |
T |
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