View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15457_low_2 (Length: 725)

Name: NF15457_low_2
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15457_low_2
NF15457_low_2
[»] chr5 (8 HSPs)
chr5 (25-474)||(37181172-37181629)
chr5 (477-707)||(37180914-37181144)
chr5 (241-282)||(16902989-16903030)
chr5 (315-384)||(39194875-39194944)
chr5 (359-415)||(7314003-7314059)
chr5 (498-537)||(13200588-13200627)
chr5 (323-381)||(22579334-22579392)
chr5 (500-537)||(31949317-31949354)
[»] chr4 (12 HSPs)
chr4 (325-419)||(8170888-8170982)
chr4 (300-402)||(8755908-8756011)
chr4 (297-412)||(13834383-13834499)
chr4 (356-420)||(5979484-5979548)
chr4 (241-285)||(12034382-12034426)
chr4 (318-413)||(30315824-30315919)
chr4 (498-569)||(35255498-35255569)
chr4 (337-412)||(38932751-38932826)
chr4 (498-537)||(46805051-46805090)
chr4 (356-402)||(4161827-4161873)
chr4 (355-416)||(48973333-48973394)
chr4 (240-285)||(51151083-51151128)
[»] chr3 (6 HSPs)
chr3 (238-384)||(14984404-14984550)
chr3 (364-419)||(23195649-23195704)
chr3 (323-417)||(34979105-34979199)
chr3 (323-382)||(48048014-48048073)
chr3 (323-402)||(53705896-53705975)
chr3 (355-417)||(24255317-24255379)
[»] chr1 (8 HSPs)
chr1 (238-419)||(6541003-6541183)
chr1 (355-419)||(34826989-34827053)
chr1 (482-539)||(43054879-43054936)
chr1 (243-312)||(16192279-16192348)
chr1 (356-422)||(5043419-5043485)
chr1 (238-285)||(9777167-9777214)
chr1 (353-384)||(12238434-12238465)
chr1 (293-376)||(43054832-43054914)
[»] chr7 (10 HSPs)
chr7 (241-384)||(18942737-18942882)
chr7 (325-402)||(25993873-25993950)
chr7 (498-569)||(8062905-8062976)
chr7 (241-384)||(34703629-34703772)
chr7 (238-280)||(3399876-3399918)
chr7 (330-384)||(5198045-5198099)
chr7 (318-420)||(10228778-10228880)
chr7 (239-285)||(23190963-23191009)
chr7 (355-417)||(29778712-29778774)
chr7 (238-312)||(39608616-39608690)
[»] chr6 (8 HSPs)
chr6 (482-569)||(25084903-25084991)
chr6 (354-419)||(3711307-3711372)
chr6 (323-383)||(10219620-10219680)
chr6 (297-384)||(33551047-33551135)
chr6 (323-387)||(34937512-34937576)
chr6 (337-383)||(12278223-12278269)
chr6 (239-285)||(25084901-25084947)
chr6 (239-384)||(25085047-25085193)
[»] chr2 (5 HSPs)
chr2 (323-419)||(12676464-12676560)
chr2 (323-383)||(23359427-23359487)
chr2 (339-375)||(28834721-28834757)
chr2 (482-542)||(6686763-6686824)
chr2 (497-562)||(7165570-7165635)
[»] scaffold0687 (1 HSPs)
scaffold0687 (297-384)||(1633-1721)
[»] chr8 (10 HSPs)
chr8 (297-384)||(7603949-7604037)
chr8 (355-419)||(16338261-16338325)
chr8 (323-419)||(21145452-21145548)
chr8 (297-415)||(3662372-3662491)
chr8 (356-420)||(24018015-24018079)
chr8 (498-569)||(4586750-4586821)
chr8 (498-537)||(14532454-14532493)
chr8 (337-412)||(33590208-33590283)
chr8 (241-419)||(34281334-34281513)
chr8 (482-538)||(42660087-42660144)
[»] scaffold0045 (1 HSPs)
scaffold0045 (498-569)||(20839-20910)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 25 - 474
Target Start/End: Complemental strand, 37181629 - 37181172
Alignment:
Q  25 tcgagtgagaagaaaaactaccccaaaaaagtaaaagatatgcgttttaggtctaatggacatgaagacacacaccacacccaatcttgttttgccacac 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||    
T  37181629 tcgagtgagaagaaaaactaccccaaaaaagtaaaagatatgcgttttaggtctaatggacatgaagacacac-------ccaatcttgttttgccacac 37181537  T
Q  125 aagcaatataaatccactcatgcccagcaaatcttggtccattgttgaccctcctccgacactctatcttaataacattctcatacattaacgtacacgt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181536 aagcaatataaatccactcatgcccagcaaatcttggtccattgttgaccctcctccgacactctatcttaataacattctcatacattaacgtacacgt 37181437  T
Q  225 ttatttacgacacggataatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaacatcattgactg 324  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||       ||||||||||||||||||||||||||||||||    
T  37181436 ttatttacgacacggataatagtcattttagtccttaaatgtgtaacgagtagtaataatatttttttaatatatcaaaattttaaaacatcattgactg 37181337  T
Q  325 tgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagttttat 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  37181336 tgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttactaattgtcatatcagttttgt 37181237  T
Q  425 cagt---------------tatcaatccctatatgaaaaggttttagtgaacattgatggattat 474  Q
     |||               ||||||||||||||||||||||||||||||||||||||||||||||    
T  37181236 aagtactcacgtactatcatatcaatccctatatgaaaaggttttagtgaacattgatggattat 37181172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 477 - 707
Target Start/End: Complemental strand, 37181144 - 37180914
Alignment:
Q  477 cagattgcacaattaaagactttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactattagtcaaat 576  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37181144 cagattgcacaattaaagactttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactattggtcaaat 37181045  T
Q  577 atgtgaatagatnnnnnnntgtcatgcttttgaattacgttcaaccttatgaaacgttcattgcaaaataacttcaacatgaaaaatctatatgtgtgaa 676  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37181044 atgtgaatagataaaaaaatgtcatgcttttgaattacgttcaaccttatgaaacgttcattgcaaaataacttcaacatgaaaaatctatatgtgtgaa 37180945  T
Q  677 caatttttggtaaatacataggacaatctag 707  Q
    |||||||||||||||||||||||||||||||    
T  37180944 caatttttggtaaatacataggacaatctag 37180914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 16902989 - 16903030
Alignment:
Q  241 taatagtcattttagtccttgaatgtataacgagtagtcata 282  Q
    |||||||||||||||||| |||||||||||||||||||||||    
T  16902989 taatagtcattttagtccctgaatgtataacgagtagtcata 16903030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 39194875 - 39194944
Alignment:
Q  315 tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    ||||||| ||||||||| ||| ||||||||| || ||  | |||||||||||||||||||||||||||||    
T  39194875 tcattgattgtgcactttgttagtcaaaatagtcactgccattaaaatgtttcgttaatattgtcatatt 39194944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 359 - 415
Target Start/End: Original strand, 7314003 - 7314059
Alignment:
Q  359 aaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatat 415  Q
    |||| |||||||||||||||||||||||| | |||||||||||| | ||||||||||    
T  7314003 aaatatttcgttaatattgtcatattggtcccttaatatacttatttattgtcatat 7314059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 537
Target Start/End: Complemental strand, 13200627 - 13200588
Alignment:
Q  498 ttttaaaattttaatatattaagagactattatgactact 537  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  13200627 ttttaaaatttagatatattaagagactattatgactact 13200588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 323 - 381
Target Start/End: Original strand, 22579334 - 22579392
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcat 381  Q
    ||||||||||||| ||| ||||| ||||||  |||| ||| ||||||||||||||||||    
T  22579334 tgtgcacttcgttagtcgaaatagtctctaatgttagaatatttcgttaatattgtcat 22579392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 537
Target Start/End: Original strand, 31949317 - 31949354
Alignment:
Q  500 ttaaaattttaatatattaagagactattatgactact 537  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  31949317 ttaaaattttaatatattaagagactattgtgattact 31949354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 325 - 419
Target Start/End: Complemental strand, 8170982 - 8170888
Alignment:
Q  325 tgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    |||| |||||| ||||||||||||||||   |||||||||||| |||||||||||||||| || | | |||||||||| | ||||||||||||||    
T  8170982 tgcaattcgttagtcaaaataatctctaatattaaaatgtttcattaatattgtcatattagtacttcaatatacttacttattgtcatatcagt 8170888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 8756011 - 8755908
Alignment:
Q  300 caaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatata 398  Q
    ||||||||||||| | ||||||| | |||||||||||  |||||||| |||||| | |||||||  ||||||||||||||||||||  | | ||||||||    
T  8756011 caaaattttaaaataatcattgattatgcacttcgttaatcaaaatagtctctaacattaaaatacttcgttaatattgtcatattaatcctttaatata 8755912  T
Q  399 ctta 402  Q
    ||||    
T  8755911 ctta 8755908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 13834383 - 13834499
Alignment:
Q  297 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaat 395  Q
    |||||||||||||||| | || |||| ||||||||| ||| ||||||||| ||| || | |||||||  || ||||||||||||||||| || | | |||    
T  13834383 tatcaaaattttaaaatagtccttgattgtgcactttgttagtcaaaatagtctttaacattaaaataatttgttaatattgtcatattagtccttcaat 13834482  T
Q  396 atacttaataattgtca 412  Q
    ||||||| | |||||||    
T  13834483 atacttacttattgtca 13834499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 356 - 420
Target Start/End: Complemental strand, 5979548 - 5979484
Alignment:
Q  356 ttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagtt 420  Q
    ||||| ||||||||||||||||||||||| ||||  ||||||||| |   |||||||||||||||    
T  5979548 ttaaattgtttcgttaatattgtcatattagttccctaatatactaatgtattgtcatatcagtt 5979484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 12034382 - 12034426
Alignment:
Q  241 taatagtcattttagtccttgaatgtataacgagtagtcataata 285  Q
    ||||||||||||| |||| ||||||||||||||||||||| ||||    
T  12034382 taatagtcattttggtccctgaatgtataacgagtagtcacaata 12034426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 30315919 - 30315824
Alignment:
Q  318 ttgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcat 413  Q
    |||| ||||||||||||| ||||||||| | | || || |||||||  ||||||||||||||||||| || | ||||| || ||| | ||||||||    
T  30315919 ttgattgtgcacttcgttagtcaaaatattatttaacgctaaaatgcatcgttaatattgtcatattagtcctttaatgtatttatttattgtcat 30315824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 35255498 - 35255569
Alignment:
Q  498 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 569  Q
    |||||||||||||||| ||| |||||||||| |||||||| | |||  ||  ||| ||||||||||||||||    
T  35255498 ttttaaaattttaatacattgagagactattgtgactactcgttacatatttagggaccaaaataactatta 35255569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 412
Target Start/End: Complemental strand, 38932826 - 38932751
Alignment:
Q  337 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtca 412  Q
    ||||||||| |||||| | ||||||| |||| |||||||||||||||| || | | |||||||||| | |||||||    
T  38932826 gtcaaaatagtctctaacattaaaatatttcattaatattgtcatattagtccttcaatatacttatttattgtca 38932751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 537
Target Start/End: Original strand, 46805051 - 46805090
Alignment:
Q  498 ttttaaaattttaatatattaagagactattatgactact 537  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  46805051 ttttaaaattttaatatattgaaagactattatgactact 46805090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 402
Target Start/End: Complemental strand, 4161873 - 4161827
Alignment:
Q  356 ttaaaatgtttcgttaatattgtcatattggttcattaatatactta 402  Q
    |||||||||||| |||||||||||||||| |||| | ||||||||||    
T  4161873 ttaaaatgtttcattaatattgtcatattagttcttcaatatactta 4161827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 416
Target Start/End: Complemental strand, 48973394 - 48973333
Alignment:
Q  355 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatc 416  Q
    ||||||||| ||| |||||||||||||||| || | | |||||||||| | |||||||||||    
T  48973394 gttaaaatgcttcattaatattgtcatattagtccttcaatatacttacttattgtcatatc 48973333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 51151128 - 51151083
Alignment:
Q  240 ataatagtcattttagtccttgaatgtataacgagtagtcataata 285  Q
    |||||||| ||||| |||||||||||| ||||||||||||| ||||    
T  51151128 ataatagttattttggtccttgaatgtgtaacgagtagtcacaata 51151083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 238 - 384
Target Start/End: Original strand, 14984404 - 14984550
Alignment:
Q  238 ggataatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaaca-tcattgactgtgcacttcgttg 336  Q
    |||||||||||||||| ||||| |||||| ||||||||||||| ||||       |||||||| |||||| |||| | ||  ||| |||||||||||||     
T  14984404 ggataatagtcattttggtcct-gaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgtta 14984502  T
Q  337 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    ||||||||| |  ||  | ||||||| |||||||||||||||||||||    
T  14984503 gtcaaaatagttcctgacattaaaatatttcgttaatattgtcatatt 14984550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 23195704 - 23195649
Alignment:
Q  364 tttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    ||||||||||||||||||||| ||   | |||||||||||| ||||||||||||||    
T  23195704 tttcgttaatattgtcatattagtctttcaatatacttaattattgtcatatcagt 23195649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 417
Target Start/End: Complemental strand, 34979199 - 34979105
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatca 417  Q
    |||||| || ||| ||||||||| |||||  | ||||||| ||||||||||||| ||||||| | ||||| |||||||||| | ||||||||||||    
T  34979199 tgtgcattttgttagtcaaaatagtctctcacattaaaatatttcgttaatattatcatattag-tcattcaatatacttacttattgtcatatca 34979105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 382
Target Start/End: Complemental strand, 48048073 - 48048014
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcata 382  Q
    |||||| |||||| ||||||||| || || |||||||||||||| ||||||| |||||||    
T  48048073 tgtgcatttcgtttgtcaaaatagtccctcgcgttaaaatgttttgttaatactgtcata 48048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 323 - 402
Target Start/End: Complemental strand, 53705975 - 53705896
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatactta 402  Q
    ||||||||| ||  ||||||||||||||| || |||||||  || ||||||||||||||||| |||  | ||||||||||    
T  53705975 tgtgcactttgtcagtcaaaataatctctcgcattaaaatactttgttaatattgtcatattagttattcaatatactta 53705896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 24255317 - 24255379
Alignment:
Q  355 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatca 417  Q
    |||||||||| | ||||||||| ||||||| |||||| ||||| |||| | ||||||||||||    
T  24255317 gttaaaatgtcttgttaatattatcatattagttcatcaatatgcttatttattgtcatatca 24255379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 238 - 419
Target Start/End: Original strand, 6541003 - 6541183
Alignment:
Q  238 ggataatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaaca-tcattgactgtgcacttcgttg 336  Q
    ||||||||||||||||| ||| ||||||| |||||| |||||||||||       ||| |||||||||||  ||| | || |||| ||| | ||| |||     
T  6541003 ggataatagtcattttaatccctgaatgtgtaacgaatagtcataatagtcctttaatgtatcaaaatttccaaatagtccttgattgttctctttgtta 6541102  T
Q  337 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    |||||  |||||| |  | ||||||| ||||||||||||||||||||| || | | |||||||||| | ||||||||||||||    
T  6541103 gtcaa--taatctttgacattaaaatatttcgttaatattgtcatattagtccttcaatatacttacttattgtcatatcagt 6541183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 34827053 - 34826989
Alignment:
Q  355 gttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatcagt 419  Q
    |||||||||||||||||||||||||||||| | ||||| |||||||||| | ||||||||||||||    
T  34827053 gttaaaatgtttcgttaatattgtcatattag-tcattcaatatacttatttattgtcatatcagt 34826989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 482 - 539
Target Start/End: Original strand, 43054879 - 43054936
Alignment:
Q  482 tgcacaattaaagactttttaaaattttaatatattaagagactattatgactacttg 539  Q
    |||| ||| ||||||||||||||||||||||||||| |  ||||||| ||||||||||    
T  43054879 tgcaaaatcaaagactttttaaaattttaatatattgatcgactattgtgactacttg 43054936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 243 - 312
Target Start/End: Complemental strand, 16192348 - 16192279
Alignment:
Q  243 atagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaa 312  Q
    |||||||||||||| ||||||||| |||| |||||||||||||       ||| ||||||||||||||||    
T  16192348 atagtcattttagtacttgaatgtgtaacaagtagtcataatattccttcaatgtatcaaaattttaaaa 16192279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 356 - 422
Target Start/End: Complemental strand, 5043485 - 5043419
Alignment:
Q  356 ttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatcagtttt 422  Q
    ||||||| ||| ||||||||||| |||||||| |||| |||||||||| | |||||||||||||||||    
T  5043485 ttaaaatattttgttaatattgttatattggt-cattcaatatacttatttattgtcatatcagtttt 5043419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 9777214 - 9777167
Alignment:
Q  238 ggataatagtcattttagtccttgaatgtataacgagtagtcataata 285  Q
    ||||||||||||||||  ||||||||||||| || |||||||||||||    
T  9777214 ggataatagtcattttgatccttgaatgtattacaagtagtcataata 9777167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 353 - 384
Target Start/End: Original strand, 12238434 - 12238465
Alignment:
Q  353 gcgttaaaatgtttcgttaatattgtcatatt 384  Q
    ||||||||||||||||||||||||||||||||    
T  12238434 gcgttaaaatgtttcgttaatattgtcatatt 12238465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 376
Target Start/End: Complemental strand, 43054914 - 43054832
Alignment:
Q  293 aatatatcaaaattttaaaacatcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatatt 376  Q
    ||||||| ||||||||||||  || |||| | |||||| ||||||||||||||| ||||  || |||||| |||||||||||||    
T  43054914 aatatattaaaattttaaaaagtctttgattttgcactacgttggtcaaaataa-ctcttacgataaaatatttcgttaatatt 43054832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 241 - 384
Target Start/End: Original strand, 18942737 - 18942882
Alignment:
Q  241 taatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaacatcattgac--tgtgcacttcgttggt 338  Q
    ||||||||||||| |||| ||||||| ||| || |||||||||||       ||| |||||||||||||||| ||| ||||   |||||| |||||| ||    
T  18942737 taatagtcattttggtccctgaatgtgtaaggaatagtcataatagtcactcaatgtatcaaaattttaaaatatctttgatcatgtgcatttcgttagt 18942836  T
Q  339 caaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    | ||||| |||||| | |||||||   |||||||||||||||||||    
T  18942837 ccaaatagtctctaacattaaaatacgtcgttaatattgtcatatt 18942882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 325 - 402
Target Start/End: Original strand, 25993873 - 25993950
Alignment:
Q  325 tgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatactta 402  Q
    |||||| |||| | ||||||||||||||  | |||||||||||||||| ||||||||||| |||   |||||||||||    
T  25993873 tgcactacgtttgacaaaataatctctaatgctaaaatgtttcgttaacattgtcatattagtttcgtaatatactta 25993950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 8062905 - 8062976
Alignment:
Q  498 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 569  Q
    |||||||||||||||| ||| | |||||||| |||||||| | ||| ||| || | ||||||||||||||||    
T  8062905 ttttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaataactatta 8062976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 384
Target Start/End: Original strand, 34703629 - 34703772
Alignment:
Q  241 taatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaaca-tcattgactgtgcacttcgttggtc 339  Q
    |||||||||||||  ||| | ||||||||||||||||||| ||||       ||| ||||||| |||||||| | ||  | | ||| |||||||||| ||    
T  34703629 taatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatcaaa-ttttaaaatagtctctaattgttcacttcgttgatc 34703727  T
Q  340 aaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    |||||| |||||| | ||||||| ||| || ||||||||||||||    
T  34703728 aaaatagtctctaactttaaaatattttgtcaatattgtcatatt 34703772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 3399876 - 3399918
Alignment:
Q  238 ggataatagtcattttagtccttgaatgtataacgagtagtca 280  Q
    ||||||||||||||||||||||||||||| |||| | ||||||    
T  3399876 ggataatagtcattttagtccttgaatgtttaacaattagtca 3399918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 384
Target Start/End: Complemental strand, 5198099 - 5198045
Alignment:
Q  330 ttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    |||||| |||||||||||||||| | |||||||  ||| ||||||||||||||||    
T  5198099 ttcgttagtcaaaataatctctaacattaaaatacttcattaatattgtcatatt 5198045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 420
Target Start/End: Original strand, 10228778 - 10228880
Alignment:
Q  318 ttgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatca 417  Q
    |||| |||||| |||||| ||||||||| ||| |  | ||||||||||| ||||| |||  |||||| || | | |||||||||||| |||||||||| |    
T  10228778 ttgattgtgcaattcgttagtcaaaatagtctttgaccttaaaatgttttgttaaaatttacatattagtccttcaatatacttaattattgtcatataa 10228877  T
Q  418 gtt 420  Q
    |||    
T  10228878 gtt 10228880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 23190963 - 23191009
Alignment:
Q  239 gataatagtcattttagtccttgaatgtataacgagtagtcataata 285  Q
    |||||||||||||||  ||  ||||||||||||||||||||||||||    
T  23190963 gataatagtcatttttatctctgaatgtataacgagtagtcataata 23191009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 355 - 417
Target Start/End: Original strand, 29778712 - 29778774
Alignment:
Q  355 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatca 417  Q
    |||||||||||||||||||||||||||||| || | | || ||| ||| | ||||||||||||    
T  29778712 gttaaaatgtttcgttaatattgtcatattagtccgtcaacatatttattcattgtcatatca 29778774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 238 - 312
Target Start/End: Complemental strand, 39608690 - 39608616
Alignment:
Q  238 ggataatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaa 312  Q
    |||||||| |||||||||||||||||||| ||| ||||||| | ||||       ||| ||||||||||||||||    
T  39608690 ggataataatcattttagtccttgaatgtgtaaggagtagttacaatagtttttcaatgtatcaaaattttaaaa 39608616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 482 - 569
Target Start/End: Complemental strand, 25084991 - 25084903
Alignment:
Q  482 tgcacaattaaagactttttaaaa-ttttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 569  Q
    |||| ||||||||||| ||||||| |||||||| |||||||||||||||| |||||| | ||  |||||| | ||||||||||||||||    
T  25084991 tgcaaaattaaagactatttaaaaattttaatacattaagagactattataactactcgttatacatccaaggaccaaaataactatta 25084903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 354 - 419
Target Start/End: Original strand, 3711307 - 3711372
Alignment:
Q  354 cgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    ||||||||||||||||||||||||||||||| |||| | |||||| ||| | | ||| ||||||||    
T  3711307 cgttaaaatgtttcgttaatattgtcatattagttcctcaatatatttatttaatgttatatcagt 3711372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 10219620 - 10219680
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 383  Q
    ||||||||| ||| ||||||||| |||||  |||||||||  |||||||||||||||||||    
T  10219620 tgtgcactttgttagtcaaaatagtctctgacgttaaaataattcgttaatattgtcatat 10219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 33551135 - 33551047
Alignment:
Q  297 tatcaaaattttaaaacatcat-tgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    |||||||||||||||| || || ||| |||||| |||||| ||||||||||| |||   ||| ||||||||| |||||||| |||||||    
T  33551135 tatcaaaattttaaaatattatctgattgtgcatttcgttagtcaaaataatttctgatgttgaaatgtttctttaatattatcatatt 33551047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 34937512 - 34937576
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggt 387  Q
    ||||||||  ||| ||||||||||| |||  |||||||||||||| |||||||| ||||||||||    
T  34937512 tgtgcactaagttagtcaaaataatatcttacgttaaaatgtttcattaatattttcatattggt 34937576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 337 - 383
Target Start/End: Complemental strand, 12278269 - 12278223
Alignment:
Q  337 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 383  Q
    ||||||||  |||||  ||||||||||||||||||||||||||||||    
T  12278269 gtcaaaattgtctcttacgttaaaatgtttcgttaatattgtcatat 12278223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 25084901 - 25084947
Alignment:
Q  239 gataatagtcattttagtccttgaatgtataacgagtagtcataata 285  Q
    ||||||||| ||||| ||||||| |||||||||||||||| ||||||    
T  25084901 gataatagttattttggtccttggatgtataacgagtagttataata 25084947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 239 - 384
Target Start/End: Complemental strand, 25085193 - 25085047
Alignment:
Q  239 gataatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaaca-tcattgactgtgcacttcgttgg 337  Q
    ||||||| | ||||| ||||  |||||| ||| ||||| ||||||||       ||| |||||||||||||||| | |  |||| ||||||||| ||| |    
T  25085193 gataataattattttggtcccagaatgtgtaaggagtaatcataatagtaccttaatgtatcaaaattttaaaatactttttgattgtgcactttgttag 25085094  T
Q  338 tcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    |||||||| ||| || | |||||||  || |||||||||||||||||    
T  25085093 tcaaaatagtctttaacattaaaataatttgttaatattgtcatatt 25085047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 12676464 - 12676560
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    ||||||||| ||| ||||||||||| |||  |||||||||||||  |||||||||||||||| || | | ||||||||||   ||||||||||||||    
T  12676464 tgtgcacttagttagtcaaaataatttctgacgttaaaatgttttattaatattgtcatattagtccctcaatatacttatctattgtcatatcagt 12676560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 23359427 - 23359487
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatat 383  Q
    |||| ||| |||| ||||||||| |||||| ||||||||||||| |||| |||||||||||    
T  23359427 tgtgtactacgttagtcaaaatagtctctaacgttaaaatgttttgttactattgtcatat 23359487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 28834721 - 28834757
Alignment:
Q  339 caaaataatctctagcgttaaaatgtttcgttaatat 375  Q
    ||||||||||||| |||||||||||||||||||||||    
T  28834721 caaaataatctctcgcgttaaaatgtttcgttaatat 28834757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 542
Target Start/End: Complemental strand, 6686824 - 6686763
Alignment:
Q  482 tgcacaattaaagact-ttttaaaattttaatatattaagagactattatgactacttgcta 542  Q
    |||||||| ||| ||| |||||||||||| ||||||| ||| |||||| |||||||||||||    
T  6686824 tgcacaatcaaaaactattttaaaattttgatatattgagaaactattttgactacttgcta 6686763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 562
Target Start/End: Complemental strand, 7165635 - 7165570
Alignment:
Q  497 tttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaata 562  Q
    ||||||||| ||||||| |||||||||||||||||  ||||  |||| ||| |||| |||||||||    
T  7165635 tttttaaaaatttaatacattaagagactattatggttactccctacacattcagggaccaaaata 7165570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 1633 - 1721
Alignment:
Q  297 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    |||||||||||||||| | |  |||| ||||||||||||||||||||||| ||||||   || |||||| || ||||||||||||||||    
T  1633 tatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatatt 1721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 7603949 - 7604037
Alignment:
Q  297 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatatt 384  Q
    |||||||||||||||| | |  |||| ||||||||||||||||||||||| ||||||   || |||||| || ||||||||||||||||    
T  7603949 tatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctctaatattgaaatgtctcattaatattgtcatatt 7604037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 419
Target Start/End: Complemental strand, 16338325 - 16338261
Alignment:
Q  355 gttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    ||||||||| || ||||||||||||||||| || ||| |||||||||| | ||||||||||||||    
T  16338325 gttaaaatgctttgttaatattgtcatatttgtccatcaatatacttacttattgtcatatcagt 16338261  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 323 - 419
Target Start/End: Original strand, 21145452 - 21145548
Alignment:
Q  323 tgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    ||||||||  ||| ||||||||| |||||  ||||||||||||||||||||||| ||||||| ||   | |||||||||| | | ||||||||||||    
T  21145452 tgtgcactatgttagtcaaaatagtctcttacgttaaaatgtttcgttaatattatcatattagtctctcaatatacttacttactgtcatatcagt 21145548  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 3662372 - 3662491
Alignment:
Q  297 tatcaaaattttaaaaca-tcattgactgtgcacttcgttggtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaat 395  Q
    |||||||||||||||| | |  |||| ||||||| | | | |||||| || || ||||| |||||||  || ||||||||||||||||| |||| |||||    
T  3662372 tatcaaaattttaaaatagttcttgattgtgcacattgcttgtcaaattagtccctagcattaaaataatttgttaatattgtcatattagttctttaat 3662471  T
Q  396 atacttaataattgtcatat 415  Q
    ||||||| | ||||||||||    
T  3662472 atacttacttattgtcatat 3662491  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 24018015 - 24018079
Alignment:
Q  356 ttaaaatgtttcgttaatattgtcatattggttcatt-aatatacttaataattgtcatatcagtt 420  Q
    ||||||| ||||||||||||||||||||| | ||||| ||||||| || |||||||||||||||||    
T  24018015 ttaaaatatttcgttaatattgtcatattag-tcattcaatatacatactaattgtcatatcagtt 24018079  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 569
Target Start/End: Complemental strand, 4586821 - 4586750
Alignment:
Q  498 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 569  Q
    |||||||||||||||| |||||||||||||| | |||||| | ||| ||| || | | ||||||||||||||    
T  4586821 ttttaaaattttaatacattaagagactattgtaactactcgttacacattcaaggatcaaaataactatta 4586750  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 537
Target Start/End: Original strand, 14532454 - 14532493
Alignment:
Q  498 ttttaaaattttaatatattaagagactattatgactact 537  Q
    |||||||||||| |||||||||||||||||| ||||||||    
T  14532454 ttttaaaattttgatatattaagagactattgtgactact 14532493  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 337 - 412
Target Start/End: Complemental strand, 33590283 - 33590208
Alignment:
Q  337 gtcaaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtca 412  Q
    |||||||||||| ||| | |||||||  ||||||||||||||||||| | ||| | |||||| ||||| |||||||    
T  33590283 gtcaaaataatccctaacattaaaatacttcgttaatattgtcatatcgattcttcaatataattaattattgtca 33590208  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 241 - 419
Target Start/End: Original strand, 34281334 - 34281513
Alignment:
Q  241 taatagtcattttagtccttgaatgtataacgagtagtcataatannnnnnnaatatatcaaaattttaaaaca-tcattgactgtgcacttcgttggtc 339  Q
    |||||||||||||||||  | ||| | |||| || ||||||||||       ||| || ||||||||||||| | || |||| | ||||||  ||| |||    
T  34281334 taatagtcattttagtctctaaatttgtaacaagcagtcataataatatttcaatgtaccaaaattttaaaatagtccttgattatgcactatgttagtc 34281433  T
Q  340 aaaataatctctagcgttaaaatgtttcgttaatattgtcatattggttcattaatatacttaataattgtcatatcagt 419  Q
    ||||||||||||  || |||||||| | | ||||||||||||||| || |||  |||||||||   ||| ||||||||||    
T  34281434 aaaataatctcttacgctaaaatgtcttgctaatattgtcatattagtccatcgatatacttatctattatcatatcagt 34281513  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 538
Target Start/End: Original strand, 42660087 - 42660144
Alignment:
Q  482 tgcacaattaaagact-ttttaaaattttaatatattaagagactattatgactactt 538  Q
    |||| ||| ||||||| ||||||||| |||||| |||||||||||||| |||||||||    
T  42660087 tgcataatcaaagactattttaaaatcttaatacattaagagactattctgactactt 42660144  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 498 - 569
Target Start/End: Original strand, 20839 - 20910
Alignment:
Q  498 ttttaaaattttaatatattaagagactattatgactacttgctacgcatccaggcaccaaaataactatta 569  Q
    |||||||||||| ||||||| |  ||||||| |||||||||||||| ||| |||| |||||| |||||||||    
T  20839 ttttaaaattttgatatattgaaggactattttgactacttgctacacattcagggaccaaattaactatta 20910  T

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