View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_low_3 (Length: 613)
Name: NF15457_low_3
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_low_3 |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Original strand, 19746874 - 19747486
Alignment:
| Q |
1 |
tgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaacataattcatacattcgtaatgataagaagcacaaaaatagttgcgaataaccaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19746874 |
tgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaacataattcatacattcgtaatgataagaagcacaaaaatagttgcgaataaccaac |
19746973 |
T |
|
| Q |
101 |
caattaatcttgccacttaaatgcacgccattgttatttcgattgaattgaatacatccaataggaatcaaagggaaactctcaatatttctccaacaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19746974 |
caattaatcttgccacttaaatgcacgccattgttatttcgattgatttgaatacatccaataggaatcaaagggaaactctcaatatttctccaacaat |
19747073 |
T |
|
| Q |
201 |
tatcacttaaactgaaaattctgacctgacttctccatgaaccgttgtggttcgcatcatcttcttctgcccgatacgccaccaacttgtaagttcctgt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
19747074 |
tatcacttaaactgaaaattctgacctgacttctccatgaaccgctgtggttcgcatcatcttcttctgcccgatatgccaccaacttgtaagttcctgt |
19747173 |
T |
|
| Q |
301 |
tgaaatatcacaaccaaaaccgaacttgaaagtttctgatgaagtgttgtagcatcggaaagtccctaattcttcagatattgttctcgtggcaggattc |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19747174 |
tgaaatatcacaaccaaaaccgaacttgaaagtttctgatgaagtgttgtagcatcggaaagtccctaattcttcagatattgttctcgtggcaggattc |
19747273 |
T |
|
| Q |
401 |
cataaacaaaaccagtattttgtatacttcctatggagagaatggaaaatcaagcaaaacaatccattgcaggaaccaacaacctgacaagtatcattcg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
19747274 |
cataaacaaaaccagtattttgtatacttcctatggagagaatggaaaatcaagcaaaacaatccattgcaggaaccaataacctgacaagtgtcattca |
19747373 |
T |
|
| Q |
501 |
aatcatgtaaattgtcaccaaaaacagtatttgaaggattctcgagtaaacgactcacggggaaggactctacactactgataggatagttcaaagttgg |
600 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19747374 |
aatcatggaaattgtcaccaaaaacagtgattgaaggattctcgagtaaacgactcacggggaaggactctacactactgataggatatttcaaagttgg |
19747473 |
T |
|
| Q |
601 |
tggtgtgagtatg |
613 |
Q |
| |
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||||||||||||| |
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| T |
19747474 |
tggtgtgagtatg |
19747486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 438 - 613
Target Start/End: Complemental strand, 23086190 - 23086015
Alignment:
| Q |
438 |
gagaatggaaaatcaagcaaaacaatccattgcaggaaccaacaacctgacaagtatcattcgaatcatgtaaattgtcaccaaaaacagtatttgaagg |
537 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||| ||||| || || | || |||| |||||||||| ||||| | | |||| |
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| T |
23086190 |
gagaatggaaaagcaagcaaagcaatccattgcaggaaccaacaacatgacatgtgtcctctgatccatggcaattgtcaccggaaacaatgatcgaaga |
23086091 |
T |
|
| Q |
538 |
attctcgagtaaacgactcacggggaaggactctacactactgataggatagttcaaagttggtggtgtgagtatg |
613 |
Q |
| |
|
||||||||||||||||||||| | |||||| || ||| |||||||||| || ||| ||||| |||||||||||||| |
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| T |
23086090 |
attctcgagtaaacgactcacagagaaggattcgacattactgatagggtacttcgaagttagtggtgtgagtatg |
23086015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 23086473 - 23086420
Alignment:
| Q |
188 |
tttctccaacaattatcacttaaactgaaaattctgacctgacttctccatgaa |
241 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| || | |||||||| |
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|
| T |
23086473 |
tttctccaacaattatcaccaaaactgaaaattctgacctcacatttccatgaa |
23086420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 23086360 - 23086318
Alignment:
| Q |
286 |
cttgtaagttcctgttgaaatatcacaaccaaaaccgaacttg |
328 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
23086360 |
cttgtaagttccggttgaaatatcacaaccaaaagtgaacttg |
23086318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 11345431 - 11345507
Alignment:
| Q |
163 |
aggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccatg |
239 |
Q |
| |
|
|||||||||||| ||||| | ||||||||||||||||| |||||| ||||||| || ||||||| |||||||||||| |
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|
| T |
11345431 |
aggaatcaaaggaaaactgttaatatttctccaacaatcatcactcaaactgagaactctgacccgacttctccatg |
11345507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 239
Target Start/End: Original strand, 11359309 - 11359385
Alignment:
| Q |
163 |
aggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccatg |
239 |
Q |
| |
|
|||||||| ||| ||||| || |||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| |
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|
| T |
11359309 |
aggaatcacaggaaaactgtcgatatttctccaacaatcatcgctcaaactgagaattctgacctgacttctccatg |
11359385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 11338905 - 11338980
Alignment:
| Q |
163 |
aggaatcaaagggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgacttctccat |
238 |
Q |
| |
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|||||||||||| ||||| | ||||||||||||||||| |||||| ||||||| || |||||| |||||||||||| |
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|
| T |
11338905 |
aggaatcaaaggaaaactgttaatatttctccaacaatcatcactcaaactgagaactctgacatgacttctccat |
11338980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36340005 - 36339960
Alignment:
| Q |
1 |
tgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaaca |
46 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
36340005 |
tgtctccgtcgaaagatcaagcgaaacaatcaccaattgctcaaca |
36339960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 3557436 - 3557376
Alignment:
| Q |
172 |
agggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacctgactt |
232 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||| ||| |||| |||| |
|
|
| T |
3557436 |
agggaaactttcaatatttctccaaacattatcacctaaactgaaaactctaacctcactt |
3557376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 173 - 227
Target Start/End: Complemental strand, 3565453 - 3565399
Alignment:
| Q |
173 |
gggaaactctcaatatttctccaacaattatcacttaaactgaaaattctgacct |
227 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||| ||| |||| |
|
|
| T |
3565453 |
gggaaactttcaatatttctccaaacattatcacctaaactgaaaactctcacct |
3565399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 1686646 - 1686691
Alignment:
| Q |
173 |
gggaaactctcaatatttctccaacaattatcacttaaactgaaaa |
218 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
1686646 |
gggaaactttcaatatttctccaaacattatcacctaaactgaaaa |
1686691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 10554167 - 10554203
Alignment:
| Q |
448 |
aatcaagcaaaacaatccattgcaggaaccaacaacc |
484 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10554167 |
aatcaagcacaacaatccattgcatgaaccaacaacc |
10554203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 448 - 484
Target Start/End: Original strand, 10571897 - 10571933
Alignment:
| Q |
448 |
aatcaagcaaaacaatccattgcaggaaccaacaacc |
484 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10571897 |
aatcaagcacaacaatccattgcatgaaccaacaacc |
10571933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Complemental strand, 26237497 - 26237458
Alignment:
| Q |
8 |
gtcgaaagatcaagggaaacaatcacaaattgctcaacat |
47 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
26237497 |
gtcgaaagatcaagcgaaagaatcacaaattgctcaacat |
26237458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24016679 - 24016641
Alignment:
| Q |
1 |
tgtctcagtcgaaagatcaagggaaacaatcacaaattg |
39 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
24016679 |
tgtctccgtcgaaagatcaagagaaacaatcacaaattg |
24016641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 26256665 - 26256619
Alignment:
| Q |
1 |
tgtctcagtcgaaagatcaagggaaacaatcacaaattgctcaacat |
47 |
Q |
| |
|
|||||| || ||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
26256665 |
tgtctccgttgaaagatcaagcgaaataatcacaaattgctcaacat |
26256619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24021658 - 24021626
Alignment:
| Q |
1 |
tgtctcagtcgaaagatcaagggaaacaatcac |
33 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
24021658 |
tgtctcggtcgaaagatcaagggaaacaatcac |
24021626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 24031005 - 24030965
Alignment:
| Q |
165 |
gaatcaaagggaaactctcaatatttctccaacaattatca |
205 |
Q |
| |
|
|||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
24031005 |
gaatcaaagggaaattgttaatatttctccaacaattatca |
24030965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 24035631 - 24035595
Alignment:
| Q |
11 |
gaaagatcaagggaaacaatcacaaattgctcaacat |
47 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
24035631 |
gaaagatcaagtgaaacaatcacaaattgcacaacat |
24035595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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