View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_low_5 (Length: 514)
Name: NF15457_low_5
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 504
Target Start/End: Complemental strand, 30196139 - 30195654
Alignment:
| Q |
18 |
ttagcttcaatgtaaaattattttacaccaacaatcaatcacaactttcgatttttaattatttgaagcattgagaagttgcaattgcattgacagtgca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
30196139 |
ttagcttcaatgtaaaattattttacaccaacaatcaatcacaactttcgatttttaatcatttgaagcattgagaagttgcaattgcattgagagtgca |
30196040 |
T |
|
| Q |
118 |
tggtctttaatctcataagctaatattttatcttttacaaaacttttggaaaccctaaatattaagatagacctaactagaaaccccatatattatgatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
30196039 |
tggtctttaatctcataagctaatattttatcttttacaaaacttttggaaaccctaaatattaagatagacctaactagaaaccccacatattatgatc |
30195940 |
T |
|
| Q |
218 |
atcagttccaatttcaaaatcccacaactcaggctgtatttccacatcactggaagatccatacacaaaacttttcaatctctcactcactttggtcgct |
317 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30195939 |
atcaggtccaatttcaaaatcccacaactcaggctgtatttccacatcactggaagatccatacacaaaacttttcaatctctcactcactttggtcgct |
30195840 |
T |
|
| Q |
318 |
ccaaattgaatacaagatggaggaatctgcataaagagagaacaattgctagggtaattaaatttcataaaattaattaagcaacaaatattgatttaga |
417 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30195839 |
ccaaattgaacacaagatggaggaatctgcataaagagagaacaattacta-ggtaattaaatttcataaaattaattaagcaacaaatattgatttaga |
30195741 |
T |
|
| Q |
418 |
tatatacctcagcatgaacaacatgaaggagtgaattatctccaaccttagaggaattaacactctttatgtctacattctcttcat |
504 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30195740 |
tatatacctcagcatgaacaacatgaaggagtgaattatctccaaccttagaggaattaacactccttatgtctacattctcttcat |
30195654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 13634656 - 13634689
Alignment:
| Q |
28 |
tgtaaaattattttacaccaacaatcaatcacaa |
61 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |
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|
| T |
13634656 |
tgtaaaattattttacactaacaatcaatcacaa |
13634689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 38608183 - 38608081
Alignment:
| Q |
223 |
ttccaatttcaaaatcccacaactcaggctgtatttccacatcactggaagatccatacacaaaacttttcaatctctcactcactttggtcgctccaaa |
322 |
Q |
| |
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|||||||||||| ||||||||| ||||| | ||||||||||||| |||||| | |||||| ||||||||||||||| | |||||| ||||||| |
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| T |
38608183 |
ttccaatttcaagatcccacaatagaggctctgtttccacatcactcacagatccgttcacaaatgctttcaatctctcacttattttggtttctccaaa |
38608084 |
T |
|
| Q |
323 |
ttg |
325 |
Q |
| |
|
||| |
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|
| T |
38608083 |
ttg |
38608081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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