View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15457_low_6 (Length: 470)
Name: NF15457_low_6
Description: NF15457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15457_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 177 - 323
Target Start/End: Complemental strand, 25572576 - 25572430
Alignment:
| Q |
177 |
cagagggagggagtgagagaataagataatggttctatagtttgaacatgaacatggatcaggagttcnnnnnnnnnnnntggatttagaattcttacct |
276 |
Q |
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| T |
25572576 |
cagagggagagagtgagagattaagataatggttctataatttgaacatgaacatggatcaagagttcaaaaactaaaaatggatttagaattcttacct |
25572477 |
T |
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| Q |
277 |
tcgcagcggtcatgctctttttcatcaaatcgaatcttcataatcac |
323 |
Q |
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| T |
25572476 |
tcgcaacggtcatgctctttttcatcaaatcgaatcttcataatcac |
25572430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 177 - 323
Target Start/End: Complemental strand, 26007044 - 26006898
Alignment:
| Q |
177 |
cagagggagggagtgagagaataagataatggttctatagtttgaacatgaacatggatcaggagttcnnnnnnnnnnnntggatttagaattcttacct |
276 |
Q |
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| T |
26007044 |
cagagggagagagtgagagattaagataatggttctataatttgaacatgaacatggatcaagagttcaaaaactaaaaatggatttagaattcttacct |
26006945 |
T |
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| Q |
277 |
tcgcagcggtcatgctctttttcatcaaatcgaatcttcataatcac |
323 |
Q |
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| T |
26006944 |
tcgcaacggtcatgctctttttcatcaaatcgaatcttcataatcac |
26006898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 45048290 - 45048223
Alignment:
| Q |
177 |
cagagggagggagtgagagaataagataatggttctatagtttgaacatgaacatggatcaggagttc |
244 |
Q |
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| T |
45048290 |
cagagggagagagtgagagaataagataatggttctatagtttcaacatgaacatggatcaggagttc |
45048223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 45048341 - 45048307
Alignment:
| Q |
120 |
aaatttttgattggatgtcgcccttttctaactat |
154 |
Q |
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| T |
45048341 |
aaatttttgattggatgtcgcccttttctaactat |
45048307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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