View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15458_high_1 (Length: 748)

Name: NF15458_high_1
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15458_high_1
NF15458_high_1
[»] chr7 (8 HSPs)
chr7 (1-354)||(14748589-14748942)
chr7 (1-357)||(14763635-14763991)
chr7 (519-632)||(14747777-14747889)
chr7 (147-292)||(14811659-14811804)
chr7 (147-292)||(15258654-15258799)
chr7 (157-193)||(14708660-14708696)
chr7 (157-193)||(14757479-14757515)
chr7 (693-726)||(14747750-14747783)
[»] chr5 (4 HSPs)
chr5 (1-357)||(17620693-17621049)
chr5 (1-357)||(17564608-17564964)
chr5 (147-292)||(17522376-17522521)
chr5 (157-193)||(17571020-17571056)
[»] chr8 (1 HSPs)
chr8 (4-333)||(24394079-24394408)
[»] chr1 (3 HSPs)
chr1 (1-355)||(15194077-15194431)
chr1 (1-355)||(15204762-15205116)
chr1 (1-355)||(15214495-15214849)
[»] chr4 (4 HSPs)
chr4 (517-624)||(30298049-30298155)
chr4 (517-624)||(30326916-30327022)
chr4 (679-723)||(30298161-30298205)
chr4 (679-723)||(30327028-30327072)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 14748942 - 14748589
Alignment:
Q  1 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14748942 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 14748843  T
Q  101 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14748842 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 14748743  T
Q  201 aatcttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttt 300  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  14748742 aatcttatagctgaggtcacaaagcagttgcagtcgcgattccttgcaaatccaacagacataaagaaacggattgagtctctcattgaaagggactttt 14748643  T
Q  301 tgaagagagatgataatgacagaaaactgtatcattatatttcttagaattggt 354  Q
    || |||||||||||| |||||||||||||||||  ||| || ||||||||||||    
T  14748642 tggagagagatgatagtgacagaaaactgtatctgtatcttgcttagaattggt 14748589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 14763991 - 14763635
Alignment:
Q  1 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 100  Q
    |||| ||||||||  |||||  ||||||||||| ||| || || |||||||||||| |||||||||||||||| ||| | |||||||||||||||| |||    
T  14763991 ttagcgaggatgacacattctatgttaatgacagatttagcagtaaactgtataagataaaaataggaactgttgttgcacaaaaggaatcggaactgga 14763892  T
Q  101 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 200  Q
    ||||||  | | ||| |||| || || |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  14763891 gaaactggacactcgacaaaaagaggaggaggatcggaagccccagattgaagcagcaatagtgaggattatgaaatccaggaagcaacttgagcacaac 14763792  T
Q  201 aatcttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttt 300  Q
    |||||||| |||||||||||  ||||||||||||| | ||||||| |||||||||| || |||||||||||||||||||||||| ||||  |||| ||||    
T  14763791 aatcttatggctgaggtcacgcagcagttgcagtcgcgattccttacaaatccaacggatgtaaagaaacggattgagtctctccttgagcgggaatttt 14763692  T
Q  301 tgaagagagatgataatgacagaaaactgtatcattatatttcttagaattggtaag 357  Q
    || | ||||||  |  |||||||||||||||||  ||| || | |||||||||||||    
T  14763691 tggaaagagatactgttgacagaaaactgtatcgatatcttgcctagaattggtaag 14763635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 519 - 632
Target Start/End: Complemental strand, 14747889 - 14747777
Alignment:
Q  519 acttcttcagttgagtggttatataacatggtaaacaacttaaaaagttgaaataagatagtaggaagatactttcttacattcaactaatcagctatat 618  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14747889 acttcttcagttgagtggttatataacatgttaaacaacttaaaa-gttgacataagatagtaggaagatactttcttacattcaactaatcagctatat 14747791  T
Q  619 cttcttattgatta 632  Q
    ||||||||||||||    
T  14747790 cttcttattgatta 14747777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 147 - 292
Target Start/End: Complemental strand, 14811804 - 14811659
Alignment:
Q  147 attgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaacaatcttatagctgaggtcacaaagcagttgcagtcacaattccttg 246  Q
    |||||||||||||||||||||||||||||||  | |||||| ||||| || || ||| ||||||| ||||| |||||| ||||  |||||   ||||||     
T  14811804 attgaagcagcaatagtgaggattatgaaattcaagaagcagcttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttc 14811705  T
Q  247 caaatccaacagacgtaaagaaacggattgagtctctcattgaaag 292  Q
      |||||||||||  |||||||| ||||||| ||||| ||||||||    
T  14811704 ttaatccaacagagataaagaaaaggattgaatctcttattgaaag 14811659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 147 - 292
Target Start/End: Complemental strand, 15258799 - 15258654
Alignment:
Q  147 attgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaacaatcttatagctgaggtcacaaagcagttgcagtcacaattccttg 246  Q
    |||||||||||||||||||||||||||||||  | |||||| ||||| || || ||| ||||||| ||||| |||||| ||||  |||||   ||||||     
T  15258799 attgaagcagcaatagtgaggattatgaaattcaagaagcagcttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttc 15258700  T
Q  247 caaatccaacagacgtaaagaaacggattgagtctctcattgaaag 292  Q
      |||||||||||  |||||||| ||||||| ||||| ||||||||    
T  15258699 ttaatccaacagagataaagaaaaggattgaatctcttattgaaag 15258654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 14708660 - 14708696
Alignment:
Q  157 caatagtgaggattatgaaatctaggaagcaacttga 193  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14708660 caatagtgaggattaagaaatctaggaagcaacttga 14708696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 14757515 - 14757479
Alignment:
Q  157 caatagtgaggattatgaaatctaggaagcaacttga 193  Q
    ||||||||||||||| |||||||||||||||||||||    
T  14757515 caatagtgaggattaagaaatctaggaagcaacttga 14757479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 693 - 726
Target Start/End: Complemental strand, 14747783 - 14747750
Alignment:
Q  693 ttgattactaccctacttcatataaaataaatca 726  Q
    |||||||||||||||||||||| |||||||||||    
T  14747783 ttgattactaccctacttcataaaaaataaatca 14747750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 17621049 - 17620693
Alignment:
Q  1 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 100  Q
    |||| |||||||| ||||||  |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  17621049 ttagcgaggatgacgcattctatgttaatgacaagttcagtagcaaactgtataagataaaaataggaactgtagttactcaaaaggaatctgaaccgga 17620950  T
Q  101 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 200  Q
    ||||||||||| ||| ||||||||   |||||| | |||||| |||| ||| |||||| ||||||||||||||||||||||  || |||| || || |||    
T  17620949 gaaactaaaaactcgacaaagagttaaggaggagcggaagccgcagactgaggcagcagtagtgaggattatgaaatctagatagaaactagatcagaac 17620850  T
Q  201 aatcttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttt 300  Q
    ||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||| ||||    
T  17620849 aatcttatagctgaggtcacaaagcagttgcggtcgcgattccttgcaaatccaacagaggtaaaaaaacagattgagtctctcattgagagggactttt 17620750  T
Q  301 tgaagagagatgataatgacagaaaactgtatcattatatttcttagaattggtaag 357  Q
    || |||||||| | | | |||||||||||||||  ||| || |||||| ||||||||    
T  17620749 tggagagagataacagtaacagaaaactgtatcggtatcttgcttagagttggtaag 17620693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 17564608 - 17564964
Alignment:
Q  1 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 100  Q
    |||| ||||||||  |||||  ||||||||||| ||| || || |||||||||||| |||||||||||||||| ||| | |||||||||||||||| |||    
T  17564608 ttagcgaggatgacacattctatgttaatgacagatttagcagtaaactgtataagataaaaataggaactgttgttgcacaaaaggaatcggaactgga 17564707  T
Q  101 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 200  Q
    ||||||  | | ||| |||| ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17564708 gaaactggacactcgacaaaaagtggaggaggatcggaagccccagattgaagcagcaatagtgaggattatgaaatccaggaagcaacttgagcacaac 17564807  T
Q  201 aatcttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttt 300  Q
    |||||||| |||||||||||  ||||||||||||| | ||||||| |||||||||| || |||||||||||||||||||||||| ||||  |||| ||||    
T  17564808 aatcttatggctgaggtcacgcagcagttgcagtcgcgattccttacaaatccaacggatgtaaagaaacggattgagtctctccttgagcgggaatttt 17564907  T
Q  301 tgaagagagatgataatgacagaaaactgtatcattatatttcttagaattggtaag 357  Q
    || | ||||||  |  |||||||||||||||||  ||| || | |||||||||||||    
T  17564908 tggaaagagatcctgttgacagaaaactgtatcgatatcttgcctagaattggtaag 17564964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 147 - 292
Target Start/End: Original strand, 17522376 - 17522521
Alignment:
Q  147 attgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaacaatcttatagctgaggtcacaaagcagttgcagtcacaattccttg 246  Q
    |||||||||||||||||||||||||||||||  | |||||| ||||| || || ||| ||||||| ||||| |||||| ||||  |||||   ||||||     
T  17522376 attgaagcagcaatagtgaggattatgaaattcaagaagcagcttgatcataagaatattatagcagaggtgacaaaggagttaaagtcattgttccttc 17522475  T
Q  247 caaatccaacagacgtaaagaaacggattgagtctctcattgaaag 292  Q
      |||||||||||  |||||||| ||||||||||||| ||||||||    
T  17522476 ttaatccaacagaaataaagaaaaggattgagtctcttattgaaag 17522521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 17571020 - 17571056
Alignment:
Q  157 caatagtgaggattatgaaatctaggaagcaacttga 193  Q
    ||||||||||||||| |||||||||||||||||||||    
T  17571020 caatagtgaggattaagaaatctaggaagcaacttga 17571056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 4 - 333
Target Start/End: Complemental strand, 24394408 - 24394079
Alignment:
Q  4 gtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccggagaa 103  Q
    ||||||||||||| |||  ||| |||||||| |||||||| ||||| || ||||| |||||||||||||||||| | ||||||||||| ||||| |||||    
T  24394408 gtgaggatgatgctttctctgtcaatgacaagttcagtagtaaactatacaaggttaaaataggaactgtagttgcacaaaaggaatccgaacctgagaa 24394309  T
Q  104 actaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaacaat 203  Q
    ||   ||| ||||||  |||||| |||||||  |||||| |||||||| || |||||||||||||| ||||||||||||| || |||||| || ||||||    
T  24394308 acaggaaactcggcagcgagtggaggaggacaggaagcctcagattgaggcggcaatagtgaggatcatgaaatctaggaggctacttgatcataacaat 24394209  T
Q  204 cttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttttga 303  Q
    ||||||||||| ||||||||||||||||||| ||  |||||||||||||||||||| || |||||||| |||||||||||||||||  |||| ||||||     
T  24394208 cttatagctgaagtcacaaagcagttgcagttacgtttccttgcaaatccaacagaggtcaagaaacgcattgagtctctcattgagcgggactttttgg 24394109  T
Q  304 agagagatgataatgacagaaaactgtatc 333  Q
    |||| |||||||| ||||||||| ||||||    
T  24394108 agagggatgataacgacagaaaaatgtatc 24394079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 2e-79; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 15194431 - 15194077
Alignment:
Q  1 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 100  Q
    ||||||||  |||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| || ||| |||| | ||||||||    
T  15194431 ttagtgagattgatgcattctttgttaatgacaagttcagtagaaaattgtataaggtaaaaataggaagtgtagttgctgaaacggaacctgaaccgga 15194332  T
Q  101 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 200  Q
    |||||| |||| ||   ||| ||| | |||||| | || ||| |||||| | ||  ||||||||||||||||||||||||||||| |||| || |||||     
T  15194331 gaaactgaaaactcaaaaaaaagttgaggaggagcggaggccgcagattcaggcttcaatagtgaggattatgaaatctaggaagaaactggaacacaat 15194232  T
Q  201 aatcttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttt 300  Q
    |||||| ||||||| || ||||||||||||||||| | |||||||||||||||||| || |||||||||| |||||||||||| ||||| |||| |||||    
T  15194231 aatcttgtagctgaagtaacaaagcagttgcagtctcgattccttgcaaatccaacggaggtaaagaaacagattgagtctctaattgagagggtgtttt 15194132  T
Q  301 tgaagagagatgataatgacagaaaactgtatcattatatttcttagaattggta 355  Q
    || |||||||| | | |||||||||| |||||| |||| || |||||||||||||    
T  15194131 tggagagagataacagtgacagaaaattgtatcgttatcttgcttagaattggta 15194077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 15205116 - 15204762
Alignment:
Q  1 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 100  Q
    ||||||||  |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||| || ||| |||| | ||||||||    
T  15205116 ttagtgagattgatgcattctttgttaatgacaagttcagtagcaaattgtataaggtaaaaataggaagtgtagttgctgaaacggaacctgaaccgga 15205017  T
Q  101 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 200  Q
    |||||| |||| ||   ||||||| | |||||| | || ||| |||||| | ||  |||||||||||||||||||||| |||||| |||| || |||||     
T  15205016 gaaactgaaaactcaagaaagagttgaggaggagcggaggccgcagattcaggcttcaatagtgaggattatgaaatcaaggaagaaactggaacacaat 15204917  T
Q  201 aatcttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttt 300  Q
    |||||| ||||||| || ||||||||||||||||| | |||||||||||||||||| || |||||||||| |||||||||||| ||||| |||| |||||    
T  15204916 aatcttgtagctgaagtaacaaagcagttgcagtctcgattccttgcaaatccaacggaggtaaagaaacagattgagtctctaattgagagggtgtttt 15204817  T
Q  301 tgaagagagatgataatgacagaaaactgtatcattatatttcttagaattggta 355  Q
    || |||||||| | | |||||| ||| |||||| |||| || |||||||||||||    
T  15204816 tggagagagataacagtgacaggaaattgtatcgttatcttgcttagaattggta 15204762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 15214849 - 15214495
Alignment:
Q  1 ttagtgaggatgatgcattcattgttaatgacaaattcagtagcaaactgtataaggtaaaaataggaactgtagttactcaaaaggaatcggaaccgga 100  Q
    ||||||||  |||||||||| ||||||||||||| |||||||| ||| ||||||||||||||||||||| ||||||| || ||| |||| | ||||||||    
T  15214849 ttagtgagattgatgcattctttgttaatgacaagttcagtagtaaattgtataaggtaaaaataggaagtgtagttgctgaaacggaacctgaaccgga 15214750  T
Q  101 gaaactaaaaattcggcaaagagtggtggaggaccagaagccccagattgaagcagcaatagtgaggattatgaaatctaggaagcaacttgagcacaac 200  Q
    |||||| |||| ||   ||| ||| | |||||| | || ||| |||||| | ||  |||||||||||||||||||||| |||||| |||| || |||||     
T  15214749 gaaactgaaaactcaataaatagttgaggaggagcggaggccgcagattcaggcttcaatagtgaggattatgaaatcaaggaagaaactggaacacaat 15214650  T
Q  201 aatcttatagctgaggtcacaaagcagttgcagtcacaattccttgcaaatccaacagacgtaaagaaacggattgagtctctcattgaaagggagtttt 300  Q
    |||||| ||||||| || ||||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||| ||||| |||| |||||    
T  15214649 aatcttgtagctgaagtaacaaagcagttgcagtctcgattccttgcaaatccaacggaggtaaagaaacggattgagtctctaattgagagggtgtttt 15214550  T
Q  301 tgaagagagatgataatgacagaaaactgtatcattatatttcttagaattggta 355  Q
    || |||||||| | | |||||||||| |||||| |||| || |||||||||||||    
T  15214549 tggagagagataacagtgacagaaaattgtatcgttatcttgcttagaattggta 15214495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 517 - 624
Target Start/End: Original strand, 30298049 - 30298155
Alignment:
Q  517 atacttcttcagttgagtggttatataacatggtaaacaacttaaaaagttgaaataagatagtaggaagatactttcttacattcaactaatcagctat 616  Q
    |||||||||||| ||||||||||| ||||||  |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  30298049 atacttcttcagctgagtggttatgtaacatattaaacaacttaaaa-gctgaaataagataataggaagatactttcttacattcaactgatcagctat 30298147  T
Q  617 atcttctt 624  Q
    || |||||    
T  30298148 attttctt 30298155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 517 - 624
Target Start/End: Original strand, 30326916 - 30327022
Alignment:
Q  517 atacttcttcagttgagtggttatataacatggtaaacaacttaaaaagttgaaataagatagtaggaagatactttcttacattcaactaatcagctat 616  Q
    |||||||||||| ||||||||||| ||||||  |||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  30326916 atacttcttcagctgagtggttatgtaacatattaaacaacttaaaa-gctgaaataagataataggaagatactttcttacattcaactgatcagctat 30327014  T
Q  617 atcttctt 624  Q
    || |||||    
T  30327015 attttctt 30327022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 679 - 723
Target Start/End: Original strand, 30298161 - 30298205
Alignment:
Q  679 ttcagtggtatggcttgattactaccctacttcatataaaataaa 723  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||    
T  30298161 ttcagcggtatggcttgattactaccctgcttcatagaaaataaa 30298205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 679 - 723
Target Start/End: Original strand, 30327028 - 30327072
Alignment:
Q  679 ttcagtggtatggcttgattactaccctacttcatataaaataaa 723  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||    
T  30327028 ttcagcggtatggcttgattactaccctgcttcatagaaaataaa 30327072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University