View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_high_10 (Length: 357)
Name: NF15458_high_10
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 7874599 - 7874941
Alignment:
| Q |
1 |
tataacatctcaaaaggccattttaatcgagagacgatctatcaggaagtttctagataaagttggaccaaatgacccgaaaaagaagacgatcttgaga |
100 |
Q |
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| T |
7874599 |
tataacatctcaaaaggccattttaatcgagagacgatctatcaagaagtttctagataaagttggaccaaatgacccaaaaaagaagacgatcttgaga |
7874698 |
T |
|
| Q |
101 |
tatcttatgtatctaatgaaaaagcatggaaacttaatggtggtgggagaacacatggagaatttttattctcgtagcgaagaaccaattgcaagagata |
200 |
Q |
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| T |
7874699 |
tatcttatgtatctaatgaaaaagcatggaaacttaatggtggtgggagaacacatggagaatttttattctcgtagcgaagaaccaattgcaagggata |
7874798 |
T |
|
| Q |
201 |
actctagccgtgattctcgacgaagaaatcgtgttgagtcacatcatagcatgaactatgatcagcataaaactgagatgaatcagtcagatagagtggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7874799 |
actctagccgtgattctcgacgaagaaatcgtgttgagtcacatcatagcatgaactatgatcagaataaaactgagatgaatcagtcagatagagtggc |
7874898 |
T |
|
| Q |
301 |
accacctgaggaatacaagtgtccaatatcctcaaggctgatg |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7874899 |
accacctgaggaatacaagtgtccaatatcctcaaggctgatg |
7874941 |
T |
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