View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15458_high_13 (Length: 309)

Name: NF15458_high_13
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15458_high_13
NF15458_high_13
[»] chr7 (1 HSPs)
chr7 (1-293)||(40382896-40383188)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 40383188 - 40382896
Alignment:
Q  1 ctatccccgttttccttcaagagcgttacattttcatgagagaaactgcttacaacgcttaccgtcgttcttcctatgtccttgcacactccatcatctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383188 ctatccccgttttccttcaagagcgttacattttcatgagagaaactgcttacaacgcttaccgtcgttcttcctatgtccttgcacactccatcatctc 40383089  T
Q  101 tctccctgcactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgggacatctggtttcctcttttactttttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40383088 tctccctgcactcatcttcctctccttcgccttctccgtcaccactttttggtctgttggacttgccggcgggacatctggtttcctcttttactttttc 40382989  T
Q  201 accattttagcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatgcttggtttcaccgttgtggtt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40382988 accattttagcttccttctgggctgggagctccttcgtcacgttcctctccggcgttgtttcgcatgtgatgcttggtttcaccgttgtggtt 40382896  T

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