View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_high_18 (Length: 235)
Name: NF15458_high_18
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6105821 - 6106039
Alignment:
| Q |
1 |
tgcattatttatatgagaatggtgagaatagttattaacccttgattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatcctat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6105821 |
tgcattatttatatgagaatggtgagaatagttattaacccttgattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatcctat |
6105920 |
T |
|
| Q |
101 |
tatttgctgtcttctctctgcctcatgtctcagcagcctcaccatcgttgtcgtttaactcagccatgctgtcatctctcccaagcttgtacctcgttga |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6105921 |
tatttgttgtcttctctctgcctcatgtctcagcagcctcaccatcgttgtcgtttaactcagccatgctgtcatctctcccaagcttgtacctcgttga |
6106020 |
T |
|
| Q |
201 |
ctcacccacgtctctctca |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
6106021 |
ctcacccacgtctctctca |
6106039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 6106569 - 6106464
Alignment:
| Q |
1 |
tgcattatttatatgagaatggtgagaatagttattaaccctt-gattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatccta |
99 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||| ||| |
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| T |
6106569 |
tgcattatttatatgagaatagtgagaatagttattaacccttagattaattttagatggctgtgattaaaaaataatatataagcatccccttattcta |
6106470 |
T |
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| Q |
100 |
ttattt |
105 |
Q |
| |
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|||||| |
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|
| T |
6106469 |
ttattt |
6106464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 40705527 - 40705748
Alignment:
| Q |
1 |
tgcattatttatatgagaatggtgagaatagttattaaccctt-gattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatccta |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40705527 |
tgcattatttatatgagaatggtgagaatagttattaacccttagattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatccta |
40705626 |
T |
|
| Q |
100 |
ttatttgctgtcttctc--tctgcctcatgtctcagcagcctcaccatcgttgtcgtttaactcagccatgctgtcatctctcccaagcttgtacctcgt |
197 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40705627 |
ttatttgttgtcttctctctctgcctcatgtctcagcagcctcaccatcgttgtcgtttaactcagccatgttgtcatctctcccaagcttgtacctcgt |
40705726 |
T |
|
| Q |
198 |
tgactcacccacgtctctctca |
219 |
Q |
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||||||||||||||||||||| |
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| T |
40705727 |
cgactcacccacgtctctctca |
40705748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 40706277 - 40706172
Alignment:
| Q |
1 |
tgcattatttatatgagaatggtgagaatagttattaaccctt-gattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatccta |
99 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||| ||| |
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| T |
40706277 |
tgcattatttatatgagaacggtgagaatagttattaacccttagattaattttagatggctgtgattaaaaaataatatataggcatccccttattcta |
40706178 |
T |
|
| Q |
100 |
ttattt |
105 |
Q |
| |
|
|||||| |
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|
| T |
40706177 |
ttattt |
40706172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 6528633 - 6528530
Alignment:
| Q |
1 |
tgcattatttatatgagaatggtgagaatagttattaaccctt-gattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatccta |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6528633 |
tgcattatttatatgagaatggcgagaatagttattaacccttagattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatcctg |
6528534 |
T |
|
| Q |
100 |
ttat |
103 |
Q |
| |
|
|||| |
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|
| T |
6528533 |
ttat |
6528530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 4337779 - 4337863
Alignment:
| Q |
23 |
tgagaatagttattaa-ccctt-gattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatcctattattt |
105 |
Q |
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||||||||||||| || ||||| |||||||||||||||||||||||||||||| |||| || ||||||||||||| ||||||||| |
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| T |
4337779 |
tgagaatagttatcaaacccttagattaattttagatggctgtgattaaaaaataatatataggcatccccttattctattattt |
4337863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 30959362 - 30959264
Alignment:
| Q |
8 |
tttatatgagaatggtgagaatagttattaaccctt-gattaattttagatggctgtgattaaaaaacaatacatgggcatccccttatcctattattt |
105 |
Q |
| |
|
|||||||||||||| |||||||| |||| | || || |||||| |||| |||| |||||||||||||||| ||||| |||||| ||||| |||||||| |
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| T |
30959362 |
tttatatgagaatgatgagaataattatcaccctttagattaactttaaatggttgtgattaaaaaacaacacatgtgcatcctcttattgtattattt |
30959264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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