View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15458_high_2 (Length: 587)
Name: NF15458_high_2
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 25614001 - 25613431
Alignment:
| Q |
1 |
ttgaaaatattttctggtgcctcgtctatgctaagaaactcaacatttttaattgcatgaaagggaacatcatataaactgatatctgctctgaccaact |
100 |
Q |
| |
|
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25614001 |
ttgaaaatattttctggtgccacatgtatgctaagaaactcaacatttttaattgcatgaaagggaacatcatatgaactgatatctgctctgaccaact |
25613902 |
T |
|
| Q |
101 |
tggacaagggtttaaacccttccgctgcattgtcttctacaaatctcgtatattcacgacaaaaagtatgtaaatcttctagaactggacaaccattaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25613901 |
tggacaagggtttaaacccttccgctgcattgtcttctacaaatctcgtatattcacgaccaaaagtatgtaaatcttctagaactggacaaccattaag |
25613802 |
T |
|
| Q |
201 |
aagtttcatgatatctttattgtatgtaaaacagatttctttcaaagataggattttgagagatggaagatcaacacataaattttcagctttaactact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25613801 |
aagtttcatgatatctttattgtatgtaaaacagatttctttcaaagataggattttgagagatggaagatcaacacacaaattttcagctttaactact |
25613702 |
T |
|
| Q |
301 |
aatctctcaagtttcaaaacaactagggttttcgacgtgaaaattgtaggattcaacttcaaggtgatactactggagagatgaaattccacaacactgc |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |
|
|
| T |
25613701 |
aatctctcaagtttcagaacaactagggttttggaggtgaaaattgtaggattcaacttcaaggtgatactattggagagatgaaattcctcaacactac |
25613602 |
T |
|
| Q |
401 |
gttgttttgcggcttctacccatgcagagaaaatgcggctaccattcttacaaaatccaaagcgacaatttatgtaaaacgttttgatgggatggttttg |
500 |
Q |
| |
|
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |
|
|
| T |
25613601 |
gctgatttgcagcttctacccatgcagagaaaatgcggctaccattcttacaaaatccaaagcgacagtttatgtaaaacgttttgatgggatgatttgg |
25613502 |
T |
|
| Q |
501 |
ttctcgaggagagagcatgaatgcattcaccatgcgacagaagctattgaagtggctgcagtctcgcacag |
571 |
Q |
| |
|
||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25613501 |
ttcccgaggagagagcatgactgcattcaccatacgacagaagctattgaagtggctgcagtctcgcacag |
25613431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 31262143 - 31261730
Alignment:
| Q |
1 |
ttgaaaatattttctggtgcctcgtctatgctaagaaactcaacatttttaattgcatgaaagggaacatcatataaactgatatctgctctgaccaact |
100 |
Q |
| |
|
|||||| |||||||||||||| | ||||| ||||||||||| ||| |||||||||| |||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
31262143 |
ttgaaagtattttctggtgccactcttatgcaaagaaactcaagattattaattgcatcaaagggaacatcatatgaattgatatctgctctgaccaact |
31262044 |
T |
|
| Q |
101 |
tggacaagggtttaaacccttccgctgcattgtcttctacaaatctcgtatattcacgacaaaaagtatgtaaatcttctagaactggacaaccattaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||| ||| |||||| | |||||||||||||||| ||||| |||||||| |
|
|
| T |
31262043 |
tggacaagggtttaaacccttccgctgcattattttcttcaactctcgtgt------------------gtaaatcttctagaacaggacatccattaag |
31261962 |
T |
|
| Q |
201 |
aagtttcatgatatctttattgtatgtaaaacagatttctttcaaagataggattttgagagatggaagatcaacacataaattttcagctttaactact |
300 |
Q |
| |
|
||||||||||| ||| || |||||| |||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31261961 |
aagtttcatgaaatcattcttgtatttaaaacagatttctaccaaatgtaggattttgagagatggaagatcaacacacaaattttcagctttaactact |
31261862 |
T |
|
| Q |
301 |
aatctctcaagtttcaaaacaactagggttttcgacgtgaaaattgtaggattcaacttcaaggtgatactac------tggagagatgaaattccacaa |
394 |
Q |
| |
|
|||||||||||||||| || ||||||||||| || || |||||||| |||||||| |||||||||||| || ||||||||| ||||||| ||| |
|
|
| T |
31261861 |
aatctctcaagtttcagaataactagggtttgggaggttaaaattgtgggattcaatatcaaggtgataccactgatgatggagagattaaattcctcaa |
31261762 |
T |
|
| Q |
395 |
cactgcgttgttttgcggcttctacccatgca |
426 |
Q |
| |
|
| | ||| ||||| |||||||||||||||||| |
|
|
| T |
31261761 |
ctcggcgctgtttagcggcttctacccatgca |
31261730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 23940778 - 23940856
Alignment:
| Q |
254 |
ttttgagagatggaagatcaacacataaattttcagctttaactactaatctctcaagtttcaaaacaactagggtttt |
332 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||| || |||| ||||||||||||||| | | ||||||||||||| |
|
|
| T |
23940778 |
ttttgagagatggaagatcaacacacaaattatcagtttcaacttttaatctctcaagtttgagatcaactagggtttt |
23940856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 344
Target Start/End: Original strand, 24005602 - 24005697
Alignment:
| Q |
249 |
taggattttgagagatggaagatcaacacataaattttcagctttaactactaatctctcaagtttcaaaacaactagggttttcgacgtgaaaat |
344 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||||||| ||| |||| ||| ||| ||||||| | ||||||||||||| | || |||||||| |
|
|
| T |
24005602 |
tagggttttgagatttggaagatcaacacacaaattttcaccttcaacttttaagctcgcaagtttgacaacaactagggttctggaggtgaaaat |
24005697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 24112251 - 24112215
Alignment:
| Q |
240 |
tttcaaagataggattttgagagatggaagatcaaca |
276 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24112251 |
tttcaaacctaggattttgagagatggaagatcaaca |
24112215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 254 - 356
Target Start/End: Complemental strand, 15498140 - 15498038
Alignment:
| Q |
254 |
ttttgagagatggaagatcaacacataaattttcagctttaactactaatctctcaagtttcaaaacaactagggttttcgacgtgaaaattgtaggatt |
353 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| || | ||| ||| || |||| | |||||||||||| | || ||||||||||| ||||| |
|
|
| T |
15498140 |
ttttgagagatggaagatgaacacacaaattttcagcttcaagttgtaacctcgcatgtttgagaacaactagggtatgagaggtgaaaattgtgggatt |
15498041 |
T |
|
| Q |
354 |
caa |
356 |
Q |
| |
|
||| |
|
|
| T |
15498040 |
caa |
15498038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 28720789 - 28720838
Alignment:
| Q |
307 |
tcaagtttcaaaacaactagggttttcgacgtgaaaattgtaggattcaa |
356 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| |||||||| |
|
|
| T |
28720789 |
tcaagtttcaaaacaactagggtttgagaggtgaaaattgcgggattcaa |
28720838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University