View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15458_high_5 (Length: 430)

Name: NF15458_high_5
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15458_high_5
NF15458_high_5
[»] chr8 (3 HSPs)
chr8 (18-430)||(37111893-37112304)
chr8 (306-430)||(37120148-37120272)
chr8 (307-430)||(37135982-37136105)


Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 37112304 - 37111893
Alignment:
Q  18 tagaatagatacaattactcgaaaaggtggcatcgaagtattagaggtataagccaatcatttttaggagagtaactcttaaaccaaccttttaatgata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37112304 tagaatagatacaattactcgaaaaggtggcatcgaagtattagaggtataagccaatcatttttaggagagtaactcttaaaccaaccttttaatgata 37112205  T
Q  118 attctttatattcttttgtgttgatttatcatttttataattcaatgtaacattgaacattgttttatcaataatatcctaattaaacttaaaatgacaa 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37112204 at-ctttatattcttttgtgttgatttatcatttttataattcaatgtaacattgaacattgttttatcaataatatcctaattaaacttaaaatgacaa 37112106  T
Q  218 ctaaaagagaacggtgagattgagggagggattattaatagtttgaatttgatactggtttgtgtttatacaaattttcttcttatacttcaggtgggtc 317  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37112105 ctaaaaaagaagggtgagattgagggagggattattaatagtttgaatttgatactggtttgtgtttatacaaattttcctcttatacttcaggtgggtc 37112006  T
Q  318 atttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgccgcagtagctcga 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||    
T  37112005 atttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacatcctctttgagtatatcataggcaacgccgcggtagctcga 37111906  T
Q  418 tcatggacctcct 430  Q
    |||||||||||||    
T  37111905 tcatggacctcct 37111893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 306 - 430
Target Start/End: Complemental strand, 37120272 - 37120148
Alignment:
Q  306 ttcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgcc 405  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||| ||||||||     
T  37120272 ttcaggtgggtcatttgcttacttgagagtagaaatgggagattttgttgccttcatagctgccggaaacatcctccttgaatatgtcattggcaacgcg 37120173  T
Q  406 gcagtagctcgatcatggacctcct 430  Q
    || ||||||||||||||||||||||    
T  37120172 gcggtagctcgatcatggacctcct 37120148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 37135982 - 37136105
Alignment:
Q  307 tcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgccg 406  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||| ||| | |||||    || |    
T  37135982 tcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcag 37136081  T
Q  407 cagtagctcgatcatggacctcct 430  Q
    | ||||||||||||||||||||||    
T  37136082 ccgtagctcgatcatggacctcct 37136105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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