View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_high_6 (Length: 386)
Name: NF15458_high_6
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 51822224 - 51822591
Alignment:
| Q |
1 |
tagcatcttcataattatcggaataacctttggtataaaatataactctcttatttgaagtttgaatttgtacctttaacttatgtattatttaatccat |
100 |
Q |
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| T |
51822224 |
tagcatcttcataattatcggaataacctttggtataaaatataactctcttatttgaagtttgaatttgcacctttaacttatgtattatttaacccat |
51822323 |
T |
|
| Q |
101 |
tgttgttgaagacaccaaggtcaatccgtgatctatacaaagattcttgcatcagacttgcacaagaagtatcaaaagtgctaagggtaatggccaacag |
200 |
Q |
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| T |
51822324 |
ggttgttgaagacaccaaggtcaatccgtgatctatacaaagattcttgcatcagacttgcacaagaagtatcaaaagtgctaagggtaatggccaacag |
51822423 |
T |
|
| Q |
201 |
cataaggaaaaagcatcagttttcccttcaaatactctcaaacaatctcaatgaagttttacaagaccttgacaatgcattgaaatcgcaaccacaactt |
300 |
Q |
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| T |
51822424 |
cataaggaaaaaacaccagttttcccttcaaatactctcaaacaatctcaatgaagttttacaagaccttgacaatgcattgaaatcgcaaccacaactt |
51822523 |
T |
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| Q |
301 |
ttactaggctcaaggaatagtcaaagtcgaacccccaaaacatcaactaaagcaactgcacataatga |
368 |
Q |
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| T |
51822524 |
ttactaggctcaaggaatagtcgaagtcgaacccccaaaatatcaactaaggcaactgcacataatga |
51822591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 69 - 337
Target Start/End: Original strand, 51852204 - 51852472
Alignment:
| Q |
69 |
tgtacctttaacttatgtattatttaatccattgttgttgaagacaccaaggtcaatccgtgatctatacaaagattcttgcatcagacttgcacaagaa |
168 |
Q |
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| T |
51852204 |
tgtacctttaacttgcatattatttaacctatgattcatgaagacaccaaggtcaatacgtgatctatacaaagattcctgcatcagacttgcacaagaa |
51852303 |
T |
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| Q |
169 |
gtatcaaaagtgctaagggtaatggccaacagcataaggaaaaagcatcagttttcccttcaaatactctcaaacaatctcaatgaagttttacaagacc |
268 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||| ||||||||| | |
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| T |
51852304 |
gtatcaaaagtactaagggcaatggccaacagcataaggaaaaagcataaattttcccttcaaatactctcaaacaatcttaatgaagctttacaagatc |
51852403 |
T |
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| Q |
269 |
ttgacaatgcattgaaatcgcaaccacaacttttactaggctcaaggaatagtcaaagtcgaaccccca |
337 |
Q |
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| T |
51852404 |
ttgacggtgtgttaaaatcgcaaccccaacttttacttggctcgaacaatggtcgaagtcgaacaccca |
51852472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 109 - 337
Target Start/End: Original strand, 51862435 - 51862663
Alignment:
| Q |
109 |
aagacaccaaggtcaatccgtgatctatacaaagattcttgcatcagacttgcacaagaagtatcaaaagtgctaagggtaatggccaacagcataagga |
208 |
Q |
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| T |
51862435 |
aagacaccaaggtcaatccgtgatctatacaaagattcttgcatcaaacttgcacaagaagtatcaaaagtacttagggttttggccaacagcataagaa |
51862534 |
T |
|
| Q |
209 |
aaaagcatcagttttcccttcaaatactctcaaacaatctcaatgaagttttacaagaccttgacaatgcattgaaatcgcaaccacaacttttactagg |
308 |
Q |
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| T |
51862535 |
acaagcgtcaattttcccttgaaacactctcgaacaatctcagtgaagctttacaagaccttgacaatgtattaaaatcgcaaccgcagcttttactagg |
51862634 |
T |
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| Q |
309 |
ctcaaggaatagtcaaagtcgaaccccca |
337 |
Q |
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||| || |||| ||||||||||| ||||| |
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| T |
51862635 |
ctcgagaaataatcaaagtcgaatcccca |
51862663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 51408756 - 51408690
Alignment:
| Q |
184 |
agggtaatggccaacagcataaggaaaaa-gcatcagttttcccttcaaatactctcaaacaatctc |
249 |
Q |
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||||| |||||||||| |||||||||||| |||||| ||||| ||||||| ||||| |||||||||| |
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| T |
51408756 |
agggtgatggccaacaacataaggaaaaaagcatcaattttctcttcaaagactcttaaacaatctc |
51408690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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