View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_high_8 (Length: 366)
Name: NF15458_high_8
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 353
Target Start/End: Complemental strand, 42183367 - 42183032
Alignment:
| Q |
18 |
catcaagtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgccattccacct |
117 |
Q |
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| T |
42183367 |
catcaagtacttgtaaatcatagcttgtctttcaagctctctccattgagcacttgtgaaaggaggataccctattcctattgaagccgccattccacct |
42183268 |
T |
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| Q |
118 |
gctgtgacaacaacaaacacaagtatgttcagacttcagaaacttgtacagaacnnnnnnngttctgatcactacttatttttctatatattattgattg |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||| |
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| T |
42183267 |
gctgtgacaaccacaaacacaagtatgttcagacttcagaaacttgtacagaactttttttgttctgaccactacttatgtttctatatattattgattg |
42183168 |
T |
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| Q |
218 |
atggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccgccatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42183167 |
atggaaaacaataagaaataaacacaaattaacctttgagggttgtgttggaggcagaaatgttgtgaaaaggttgaaaatttaaggatacaccaccatt |
42183068 |
T |
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| Q |
318 |
atcaatgatagcattagcacctagagcagaataatc |
353 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
42183067 |
atcaatgatagcattagcacctagagcagaagaatc |
42183032 |
T |
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