View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15458_low_11 (Length: 365)

Name: NF15458_low_11
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15458_low_11
NF15458_low_11
[»] chr3 (15 HSPs)
chr3 (50-355)||(19428029-19428349)
chr3 (57-254)||(19337582-19337786)
chr3 (57-158)||(18105892-18105993)
chr3 (1-51)||(19427663-19427713)
chr3 (59-146)||(19382988-19383076)
chr3 (248-355)||(23373772-23373878)
chr3 (73-109)||(19395320-19395356)
chr3 (96-143)||(17942991-17943038)
chr3 (99-149)||(14895300-14895350)
chr3 (99-149)||(19354755-19354805)
chr3 (99-149)||(19400769-19400819)
chr3 (152-185)||(39126965-39126998)
chr3 (99-147)||(19381933-19381981)
chr3 (96-156)||(19394186-19394246)
chr3 (99-147)||(19465393-19465441)
[»] chr6 (2 HSPs)
chr6 (250-355)||(31273843-31273948)
chr6 (57-149)||(13665860-13665953)
[»] chr1 (2 HSPs)
chr1 (248-355)||(26215303-26215410)
chr1 (152-188)||(917320-917356)
[»] chr8 (1 HSPs)
chr8 (83-149)||(8460590-8460656)
[»] chr4 (3 HSPs)
chr4 (152-187)||(25723903-25723938)
chr4 (152-187)||(35371051-35371086)
chr4 (99-149)||(2709483-2709533)
[»] chr7 (1 HSPs)
chr7 (152-187)||(22066561-22066597)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 50 - 355
Target Start/End: Original strand, 19428029 - 19428349
Alignment:
Q  50 ttttctgaataacttgtttgtagaattccacttgaattattttatattattcaagttcaaactttgaacatatctcataataatttgagtggaacaa--- 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  19428029 ttttctgaataacttgtttgtagaattccacttgaattattttatattattcaagttcaaactttgaacatatctcataataatttgagtggaacaatac 19428128  T
Q  147 ------------tacagaacacaaacatcaaattttgagtcaaactcaacaataacaatgtggaaaaacattttgaagcctaaactctcaagtgtaaatg 234  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19428129 agtacaggacaatacagaacacaaacatcaaattttgagtcaaactcaacaataacaatgtggaaaaacattttgaagcctaaactctcaagtgtaaatg 19428228  T
Q  235 tataataaataattaaaacttcatcatgattttagtcccccatacacagacatttctgtttatagaaggttagttggtaggttgttgtatctcaacacaa 334  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19428229 tataataaataattaaaacttcatcatgattccagtcccccatacacagacatttctgcttatagaaggttagttggtaggttgttgtatctcaacacaa 19428328  T
Q  335 caagacttgacattacctttg 355  Q
    |||||| ||||||||||||||    
T  19428329 caagacctgacattacctttg 19428349  T

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Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 57 - 254
Target Start/End: Original strand, 19337582 - 19337786
Alignment:
Q  57 aataacttgtttgtagaa---ttccacttgaattattttatattattcaagttcaaactttgaacatat----ctcataataatttgagtggaacaatac 149  Q
    ||||||||||||||| ||   ||||||||||||| |||||| ||| |||||||||||||||||||||||    ||| |||||||||||||||||||||||    
T  19337582 aataacttgtttgtacaacaattccacttgaattgttttatcttagtcaagttcaaactttgaacatatatatctcgtaataatttgagtggaacaatac 19337681  T
Q  150 agaacacaaacatcaaattttgagtcaaactcaacaataacaatgtggaaaaacattttgaagcctaaactctcaagtgtaaatgtataataaataatta 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19337682 agaacacaaacatcaaattttgagtcaaactcaacaataacaacgtggaaaaacattttgaagcctaaactctcaagtgtaaatgtataataaataatta 19337781  T
Q  250 aaact 254  Q
    |||||    
T  19337782 aaact 19337786  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 18105892 - 18105993
Alignment:
Q  57 aataacttgtttgtagaa-ttccacttgaattattttatatt-attcaagttcaaactttgaacatatctcataataatttgagtggaacaatacagaac 154  Q
    |||| ||||||||||||| ||||| |||||||||||||| || | ||  ||||||||||||||||||||||||| ||| |||| ||||||||||||||||    
T  18105892 aatagcttgtttgtagaagttccagttgaattattttatcttgaatc--gttcaaactttgaacatatctcatattaagttgactggaacaatacagaac 18105989  T
Q  155 acaa 158  Q
    ||||    
T  18105990 acaa 18105993  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 19427663 - 19427713
Alignment:
Q  1 atgtgatataccaactttcctttgttgcatagtgatagcttagggctcctt 51  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19427663 atgtgatataccaactttcttttgttgcatagtgatagcttagggctcctt 19427713  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 19382988 - 19383076
Alignment:
Q  59 taacttgtttgtagaa-ttccacttgaattattttatattattcaagttcaaactttgaacatatctcataataatttgagtggaacaa 146  Q
    |||||||| ||| ||| |||||||||||||||||||| |||||||||||||   ||||| ||||||||||| ||| |||| ||||||||    
T  19382988 taacttgtatgttgaagttccacttgaattattttatcttattcaagttcactttttgagcatatctcatattaagttgactggaacaa 19383076  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 355
Target Start/End: Complemental strand, 23373878 - 23373772
Alignment:
Q  248 taaaacttcatcatgattttagtcccccatacacagacatttctgtttatagaaggttagttggtaggttgttgtatctcaacacaacaagacttgacat 347  Q
    ||||||||||||||||||  ||||| | |||||| | ||| | || ||| |||||| ||||||||||||||||| |||| |||||| |||||| ||| ||    
T  23373878 taaaacttcatcatgattccagtccac-atacacggtcatctttgcttacagaaggctagttggtaggttgttgcatcttaacacagcaagacctgatat 23373780  T
Q  348 tacctttg 355  Q
    ||| ||||    
T  23373779 tacttttg 23373772  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 19395320 - 19395356
Alignment:
Q  73 aattccacttgaattattttatattattcaagttcaa 109  Q
    |||||||||||||||||||||| ||||||||||||||    
T  19395320 aattccacttgaattattttatcttattcaagttcaa 19395356  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 17942991 - 17943038
Alignment:
Q  96 ttattcaagttcaaactttgaacatatctcataataatttgagtggaa 143  Q
    |||||||||||||||| |||||| ||||||| |||||||||| |||||    
T  17942991 ttattcaagttcaaacattgaacttatctcacaataatttgactggaa 17943038  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 14895350 - 14895300
Alignment:
Q  99 ttcaagttcaaactttgaacatatctcataataatttgagtggaacaatac 149  Q
    ||||||||||||| || ||| ||||||| |||||||||| |||||||||||    
T  14895350 ttcaagttcaaacgttaaacttatctcacaataatttgattggaacaatac 14895300  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 19354755 - 19354805
Alignment:
Q  99 ttcaagttcaaactttgaacatatctcataataatttgagtggaacaatac 149  Q
    ||||||||||||| || ||| ||||||||||||| |||| |||||||||||    
T  19354755 ttcaagttcaaaccttaaacttatctcataataacttgaatggaacaatac 19354805  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 19400769 - 19400819
Alignment:
Q  99 ttcaagttcaaactttgaacatatctcataataatttgagtggaacaatac 149  Q
    ||||||||||||| || ||| ||||||| |||||||||| |||||||||||    
T  19400769 ttcaagttcaaacgttaaacttatctcacaataatttgattggaacaatac 19400819  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 39126998 - 39126965
Alignment:
Q  152 aacacaaacatcaaattttgagtcaaactcaaca 185  Q
    ||||| ||||||||||||||||||||||||||||    
T  39126998 aacacgaacatcaaattttgagtcaaactcaaca 39126965  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 19381933 - 19381981
Alignment:
Q  99 ttcaagttcaaactttgaacatatctcataataatttgagtggaacaat 147  Q
    ||||||||||||| |||||| ||||||| |||||||| | |||||||||    
T  19381933 ttcaagttcaaacattgaacttatctcacaataatttcattggaacaat 19381981  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 19394186 - 19394246
Alignment:
Q  96 ttattcaagttcaaactttgaacatatctcataataatttgagtggaacaatacagaacac 156  Q
    |||||||||||||||| || ||  ||||||| |||||||| | ||||||||||| ||||||    
T  19394186 ttattcaagttcaaacgttaaatctatctcacaataatttcattggaacaataccgaacac 19394246  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 19465393 - 19465441
Alignment:
Q  99 ttcaagttcaaactttgaacatatctcataataatttgagtggaacaat 147  Q
    ||||||||||||| |||||| ||||||| |||| ||||| |||||||||    
T  19465393 ttcaagttcaaacattgaacttatctcacaatagtttgactggaacaat 19465441  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 31273843 - 31273948
Alignment:
Q  250 aaacttcatcatgattttagtcccccatacacagacatttctgtttatagaaggttagttggtaggttgttgtatctcaacacaacaagacttgacatta 349  Q
    |||||||||| |||||  ||||| ||||||||||| || |||| ||| |||||| | |||||||||||||||||||| ||||||||||||| ||| ||||    
T  31273843 aaacttcatcgtgattccagtccaccatacacagatatatctgcttacagaaggcttgttggtaggttgttgtatcttaacacaacaagacctgatatta 31273942  T
Q  350 cctttg 355  Q
    | ||||    
T  31273943 cttttg 31273948  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 13665953 - 13665860
Alignment:
Q  57 aataacttgtttgtagaatt-ccacttgaattattttatattattcaagttcaaactttgaacatatctcataataatttgagtggaacaatac 149  Q
    |||| |||||||| |||||| ||||| ||||||||| |  || ||||||||||||| |||||| ||||||| |||||||||| |||||||||||    
T  13665953 aatagcttgtttggagaattgccactggaattatttcagcttgttcaagttcaaacattgaacttatctcacaataatttgactggaacaatac 13665860  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 248 - 355
Target Start/End: Original strand, 26215303 - 26215410
Alignment:
Q  248 taaaacttcatcatgattttagtcccccatacacagacatttctgtttatagaaggttagttggtaggttgttgtatctcaacacaacaagacttgacat 347  Q
    ||||||||||||||||||  ||||  |||||||||||  | |||  ||| |||| | | ||||||||| |||||||||| ||||||||||||| ||| ||    
T  26215303 taaaacttcatcatgattccagtcaaccatacacagatgtctctccttacagaatgcttgttggtaggctgttgtatcttaacacaacaagacctgatat 26215402  T
Q  348 tacctttg 355  Q
    ||| ||||    
T  26215403 tacttttg 26215410  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 188
Target Start/End: Complemental strand, 917356 - 917320
Alignment:
Q  152 aacacaaacatcaaattttgagtcaaactcaacaata 188  Q
    |||| |||||||||||||| |||||||||||||||||    
T  917356 aacataaacatcaaattttaagtcaaactcaacaata 917320  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 8460590 - 8460656
Alignment:
Q  83 gaattattttatattattcaagttcaaactttgaacatatctcataataatttgagtggaacaatac 149  Q
    ||||||||| || || | ||||||||||| |||||| ||||||| |||||||||| |||||||||||    
T  8460590 gaattatttcatcttgtccaagttcaaacattgaacttatctcacaataatttgattggaacaatac 8460656  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 25723903 - 25723938
Alignment:
Q  152 aacacaaacatcaaattttgagtcaaactcaacaat 187  Q
    |||||||||||||||||||||||||| |||||||||    
T  25723903 aacacaaacatcaaattttgagtcaatctcaacaat 25723938  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 35371051 - 35371086
Alignment:
Q  152 aacacaaacatcaaattttgagtcaaactcaacaat 187  Q
    |||||||||||||||||||||||| |||||||||||    
T  35371051 aacacaaacatcaaattttgagtctaactcaacaat 35371086  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 2709533 - 2709483
Alignment:
Q  99 ttcaagttcaaactttgaacatatctcataataatttgagtggaacaatac 149  Q
    ||||||||||| | |||||| ||||||| |||||||||| |||||||||||    
T  2709533 ttcaagttcaatcattgaacttatctcacaataatttgactggaacaatac 2709483  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 187
Target Start/End: Complemental strand, 22066597 - 22066561
Alignment:
Q  152 aacacaaacatcaaattttgagtc-aaactcaacaat 187  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22066597 aacacaaacatcaaattttgagtcaaaactcaacaat 22066561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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