View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_low_14 (Length: 331)
Name: NF15458_low_14
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 58 - 316
Target Start/End: Original strand, 2160791 - 2161045
Alignment:
| Q |
58 |
tttttccagctggagcttccggatttgggtgggtagcccaagacctcatttggacgtaccaactgggagtatttttgtgtgtgagactttggtatatgcc |
157 |
Q |
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| T |
2160791 |
tttttccagctggagcttccggatttgggt----aacccaagacctcatttggacgtaccaactgggagtatttttgtgtgtgagactttggtatatgcc |
2160886 |
T |
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| Q |
158 |
agcaaaattgaggagataaggttgagtttgggattcggattcgatgcagcatttgcacttgacagaatgagaagaattggtgggttttgaatggtcgcta |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2160887 |
agcaaaattgaggagataaggttgagtttgggattcggattcgatgcagcatttgcacttgacagaatgagaagaatcggtgggttttgaatggtcgcta |
2160986 |
T |
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| Q |
258 |
caatggcactcatcaaattttattgacctggatgacactttacatgtttctatcgtttc |
316 |
Q |
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| T |
2160987 |
caatggcactcatcaaattttattgacctggatgacactttacatgtttctatcgtttc |
2161045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2160686 - 2160748
Alignment:
| Q |
1 |
cccatatagcaacataagaaattcattgagggcattacaaaatcagaatggtgagtatttttc |
63 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2160686 |
cccatatagcaacataagaaattcattgagggcattacaaaaccagaatggtgagtatttttc |
2160748 |
T |
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