View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15458_low_18 (Length: 304)
Name: NF15458_low_18
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 178 - 266
Target Start/End: Original strand, 39288630 - 39288718
Alignment:
| Q |
178 |
tatccatattcatgtttataatatgtttatggttttgtgttcgcaatgttgcatctgtcgttgttatagtagttcatacataacagtga |
266 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
39288630 |
tatccatatttatgtttataatatgtttatggttttgtgttcgcaatgttgcatctgtcgttgttatagcagttaatacataacagtga |
39288718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 39288466 - 39288554
Alignment:
| Q |
20 |
tcaccctcttccttacaaacttcttagatttaatctaatatatatatcaccacttttaatgactttcatccctctacttaacaggtaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
39288466 |
tcaccctcttccttacaaacttcttagatttaatctaatgtatatatcaccacttttaatgactttcgttcctctacttaacagctaaa |
39288554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University