View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_low_20 (Length: 288)
Name: NF15458_low_20
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 7874370 - 7874619
Alignment:
| Q |
19 |
attgcatttgaaaaaacttccataaacaagttaatccaaactgagttttatcctttctgttgcaggtttctagaataattgatgatcttgagtatgctac |
118 |
Q |
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| T |
7874370 |
attgtatttgaaaaaacttccataaacaagttaatccaaactgtgttttatcctttctgttgcaggtttctagaataattgatgatcttgagtatgctac |
7874469 |
T |
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| Q |
119 |
gtttgttctggattttgctgaagaagaggctgggagagttgtaagagaattgcttcatcaaggttcaacctcagattccgtggacgactttgaagttaaa |
218 |
Q |
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| T |
7874470 |
atttgttctggattttgctgaagaagaggctgggagagttgtaagagaattgcttcatcaaggttcaacctcagattccgtggacgactttgaagttaaa |
7874569 |
T |
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| Q |
219 |
gctcttcagtttgtagcaccaagactgaatataacatctcaaaaggccat |
268 |
Q |
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| T |
7874570 |
gctcttcagtttgcagcaccaagactgaatataacatctcaaaaggccat |
7874619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 32838836 - 32838733
Alignment:
| Q |
79 |
tgcaggtttctagaataattgatgatcttgagtatgctacgtttgttctggattttgctgaagaagaggctgggagagttgtaagagaattgcttcatca |
178 |
Q |
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||||| ||||| ||||| ||||||||||| | || || ||||| ||||||| ||||||||||||||||||||| ||| | ||||||||||| || || |
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| T |
32838836 |
tgcagatttctcgaatagttgatgatcttaggcgtgtcacctttgtcctggattctgctgaagaagaggctgggagggttatgagagaattgctccaaca |
32838737 |
T |
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| Q |
179 |
aggt |
182 |
Q |
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|||| |
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| T |
32838736 |
aggt |
32838733 |
T |
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