View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15458_low_24 (Length: 250)
Name: NF15458_low_24
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 88 - 224
Target Start/End: Complemental strand, 37793876 - 37793742
Alignment:
| Q |
88 |
gaagaatcgtcgtaaagcattaaatgtaaaataaagcaggaatattcttcttattactattaactattttgagagatagagagagatggtaaacaaaaaa |
187 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793876 |
gaagaatcgtcataaagcattaaatgtaaaataaagcaggaatattcttcttatta--attaactattttgagagatagagagagatggtaaacaaaaaa |
37793779 |
T |
|
| Q |
188 |
tatagaagcgagaaagaaatgctattttatttcaaat |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37793778 |
tatagaagcgagaaagaaatgctattttatttcaaat |
37793742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University