View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_low_29 (Length: 206)
Name: NF15458_low_29
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 3e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 42182757 - 42182549
Alignment:
| Q |
1 |
ttgttatattataccaatagtaaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatgaa |
100 |
Q |
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| T |
42182757 |
ttgttatattatgccaatagtaaaaagaatcaaccaccaaaattaactttttcaggtaaggaagatagtgctgtttctaaataggagtaggggtaatgaa |
42182658 |
T |
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| Q |
101 |
atgataatgaatatgatatgataatatat---agtatagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggagag |
197 |
Q |
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||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42182657 |
atgataatgcatatgatatggtaatatatagtagtatagtagtacagcaacaaaggctaggcttgaggcatgtaaagaagacaggtgttggaatggagag |
42182558 |
T |
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| Q |
198 |
atttatgat |
206 |
Q |
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| T |
42182557 |
atttatgat |
42182549 |
T |
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