View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15458_low_4 (Length: 512)

Name: NF15458_low_4
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15458_low_4
NF15458_low_4
[»] chr3 (11 HSPs)
chr3 (19-370)||(7586952-7587303)
chr3 (16-491)||(6795076-6795569)
chr3 (16-492)||(8470644-8471132)
chr3 (16-363)||(6839509-6839856)
chr3 (50-358)||(8569564-8569872)
chr3 (86-142)||(5279816-5279872)
chr3 (89-161)||(8453813-8453885)
chr3 (29-132)||(4389767-4389870)
chr3 (227-330)||(6258506-6258609)
chr3 (227-330)||(6722701-6722804)
chr3 (373-425)||(7587318-7587370)
[»] scaffold1643 (1 HSPs)
scaffold1643 (19-277)||(1248-1506)
[»] chr7 (2 HSPs)
chr7 (21-363)||(6573924-6574266)
chr7 (388-492)||(6573762-6573866)
[»] scaffold0958 (1 HSPs)
scaffold0958 (21-151)||(681-811)


Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 7586952 - 7587303
Alignment:
Q  19 actcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaa 118  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||| |||| ||||  |||||||||||||| |||||| ||||||||||||| |||||||    
T  7586952 actcagcgtttgaagatggtttagcctccctatcttctttggcatcttctttatattacagccttcaagatgaagatggcgtaaactcacaaatttgtaa 7587051  T
Q  119 aattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg 218  Q
    ||||||||||||||||||||||||||| ||||| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7587052 aattttgaagggagtttagtcaattcaaaacagtcttccagtattagtgtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg 7587151  T
Q  219 attcagttaggtttagatatcgcaaaagctttagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaatattt 318  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || || ||||||||||||| ||||||||||||||    
T  7587152 attcagtcaggtttagatatcgcaaaagctttagatttcctatctcacctgatagctctttgagtttataaccacagaatgacaacatccgcaaatattt 7587251  T
Q  319 tagttttgaaaatagatcacgttgcaaattgttgcttatcatgaaatagtct 370  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  7587252 tagtttcgaaaatagatcacgttgcaaattgttgcttgtcatgaaatagtct 7587303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 491
Target Start/End: Complemental strand, 6795569 - 6795076
Alignment:
Q  16 atgactcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttg 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||  |||||||| |||||||||||| |||||||| |||||||||    
T  6795569 atgactcagtgtttgaagatggtttagactccccatctgctttggcattttctttatatgacagcctttaagattaagatggcgtaaactaacaagtttg 6795470  T
Q  116 taaaattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaatta 215  Q
    ||||| |||||||||||| ||||||| | | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| | |||    
T  6795469 taaaactttgaagggagtgtagtcaaataataacagccttccagtatcagtgtctctaatttgtacagcttacaaattgagtcaggaaacctttgagtta 6795370  T
Q  216 atgattcagttaggtttagatatcgcaaaagctttagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaata 315  Q
    ||| | |||  ||||||||||| |||||||||||||||||||||||||||| ||||||||||  ||||  |||| |||| || ||||| |||||||||||    
T  6795369 atgttccagccaggtttagatagcgcaaaagctttagatttcctatctcacttgatagctctctgagttcacaaccacataacgacaacatccgcaaata 6795270  T
Q  316 ttttagttttgaaaatagatcacgttgcaaattgttgcttatcatgaa------------atagtctcgt------ggtactactaacaagctgcgtaat 397  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||            |||| |||||      |||||||| || ||||||||||||    
T  6795269 ttttagtttcgaaaatagatcactttgcaaattgttgcttatcatgaagcatttgtaatgatagcctcgtggtagcggtactaccaagaagctgcgtaat 6795170  T
Q  398 cccttgatcttagaaatgtgattcaatattcccgcaccatcatcacaatcaagagagcagcaaacgtgtcgtgttctttcagatttatcttgca 491  Q
    ||||| || ||||||||||||||||||| || ||||||||| || ||||||||| |||| ||||  || ||||||||||||  | |||||||||    
T  6795169 cccttaatattagaaatgtgattcaatactctcgcaccatcttcccaatcaagatagcaacaaatatgacgtgttctttcaattatatcttgca 6795076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 16 - 492
Target Start/End: Original strand, 8470644 - 8471132
Alignment:
Q  16 atgactcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttg 115  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| || ||||  ||||||||||||||| ||||| |||||||  |||||||||    
T  8470644 atgactcagcgtttgaagatggattagactccctatctgctttggcatttcctttatattacagccttcaagattgagatggcgtaaacaaacaagtttg 8470743  T
Q  116 taaaattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaatta 215  Q
    ||||| |||||||||||||||||||||| |||||||||||| || || |  ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  8470744 taaaaatttgaagggagtttagtcaatttagaacagccttctagtattaatgtctctaatttattcagcttacaaattgagtcaggcaacctttcaatta 8470843  T
Q  216 atgattcagttaggtttagatatcgcaaaagctttagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaata 315  Q
    ||| | |||  | ||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||  |||||  ||||||||||| |||||||||||    
T  8470844 atgttccagccaagtttagatagcgcaaaagctttagatttcctatctcacccgctagctctttgagttcacaatggcagaatgacaacatccgcaaata 8470943  T
Q  316 ttttagttttgaaaatagatcacgttgcaaattgttgcttatcatgaa------------atagtctcgtggtactactaacaagctgcgtaatcccttg 403  Q
    ||||||||||||||||| || ||||||||||||||||  |||||||||            |||| |||||| | |||| | || ||||||||| |||||     
T  8470944 ttttagttttgaaaatatattacgttgcaaattgttgtctatcatgaagcagtctttaccatagcctcgtgattctaccagcaggctgcgtaaccccttt 8471043  T
Q  404 atcttagaaatgtgattcaatattcccgcaccatcatcacaatcaagagagcagcaaacgtgtcgtgttctttcagatttatcttgcac 492  Q
    |||||| |||| || || |||||||  |||||||| |   |||||||| | ||||||| ||| ||||||||||||||| ||||||||||    
T  8471044 atcttataaatctgctttaatattctagcaccatctttcaaatcaagataacagcaaatgtgacgtgttctttcagatatatcttgcac 8471132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 363
Target Start/End: Complemental strand, 6839856 - 6839509
Alignment:
Q  16 atgactcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttg 115  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| |||| ||||  ||||||||||||||||||||| |||||||| || ||||||    
T  6839856 atgactcagtgtttgaagatggtttagcctccctatcttctttggcatcttctttatattacagccttcaagattaagatggcgtaaactgactagtttg 6839757  T
Q  116 taaaattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaatta 215  Q
    ||||| ||||||||||||| |||||||||| ||||    ||||  || || |||||||| || || || |||||||| || || |||||||||| |||      
T  6839756 taaaaatttgaagggagttcagtcaattcataacacttctccaatattagtgtctctaaattataaaggttacaaatagaatctggcaaccttttaatct 6839657  T
Q  216 atgattcagttaggtttagatatcgcaaaagctttagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaata 315  Q
     ||   |  | | || |||||| ||||  ||||||||||||| ||||||||||| ||| |||| ||||  ||||| |||||||||||| ||||| | |||    
T  6839656 gtgtgcctctcatgtctagataacgcagcagctttagatttcgtatctcacctgctagttctttgagttcacaataacagaatgacaacatccgaagata 6839557  T
Q  316 ttttagttttgaaaatagatcacgttgcaaattgttgcttatcatgaa 363  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  6839556 ttttagttttgaaaacagatcacgttgcacattgttgcttatcatgaa 6839509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 50 - 358
Target Start/End: Complemental strand, 8569872 - 8569564
Alignment:
Q  50 atctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaattttgaagggagtttagtcaattcagaac 149  Q
    |||||||||||||| ||||  ||| ||  |||||  ||||||||||| |||||| |  ||||||||||||| | ||||||||| || |||||||||||||    
T  8569872 atctgctttggcatcttcttaatatcagtgccttttagattaagatggcgtaaattggcaagtttgtaaaaatatgaagggagcttggtcaattcagaac 8569773  T
Q  150 agccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatgattcagttaggtttagatatcgcaaaagctt 249  Q
    |  ||||||  || || || | ||| || |||| ||||||||| || ||||||||||||| |||   ||    ||| || | |||||| |||||||||||    
T  8569772 attcttccaatattagtgtttgtaaattatacaacttacaaatggaatcaggcaaccttttaatctctgtgcgagtcagatctagatagcgcaaaagctt 8569673  T
Q  250 tagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaatattttagttttgaaaatagatcacgttgcaaattg 349  Q
    || ||| | ||||||| |||| ||||||  |||   ||||||||| ||||| || ||||| || ||||||||||||||||| |  ||| |||| | ||||    
T  8569672 taaattgcatatctcatctgacagctctgtgagatcacaatcacaaaatgataacatccgtaagtattttagttttgaaaaaatttcatgttgaacattg 8569573  T
Q  350 ttgcttatc 358  Q
    |||||||||    
T  8569572 ttgcttatc 8569564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 5279816 - 5279872
Alignment:
Q  86 agattaagatgacgtaaactcacaagtttgtaaaattttgaagggagtttagtcaat 142  Q
    |||||||||||||||||| | |||||||||||||| ||||||||||| | |||||||    
T  5279816 agattaagatgacgtaaattgacaagtttgtaaaaatttgaagggagctcagtcaat 5279872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 8453813 - 8453885
Alignment:
Q  89 ttaagatgacgtaaactcacaagtttgtaaaattttgaagggagtttagtcaattcagaacagccttccagca 161  Q
    ||||||||||||||| | || |||||| |||| ||||||||||| |  ||||||||| |||||||||||||||    
T  8453813 ttaagatgacgtaaattgacgagtttggaaaaatttgaagggagctctgtcaattcacaacagccttccagca 8453885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 4389870 - 4389767
Alignment:
Q  29 tgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaattttgaag 128  Q
    |||||||||||||| ||||||||||  |||||||| |||| ||||| |  |||||| |||| ||||||||||||  |   |||||||||||| | |||||    
T  4389870 tgaagatggtttagcctccctatctcttttggcatcttctttataagagtgccttccagatcaagatgacgtaagtttgtaagtttgtaaaaatctgaag 4389771  T
Q  129 ggag 132  Q
    ||||    
T  4389770 ggag 4389767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 330
Target Start/End: Original strand, 6258506 - 6258609
Alignment:
Q  227 aggtttagatatcgcaaaagctttagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaatattttagttttg 326  Q
    |||| |||||| |||| ||||||||  |||| ||||||| | | |||||||  |||  | ||| || |||| |||||||||||||||||||||||| |||    
T  6258506 aggtctagatagcgcagaagctttaagtttcttatctcatcagctagctctaagagattgcaaccagagaaagacaatatccgcaaatattttagtcttg 6258605  T
Q  327 aaaa 330  Q
    ||||    
T  6258606 aaaa 6258609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 330
Target Start/End: Complemental strand, 6722804 - 6722701
Alignment:
Q  227 aggtttagatatcgcaaaagctttagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaatattttagttttg 326  Q
    |||| |||||| ||||||||||||| ||| | ||||||| | |||||||||  |||  | ||| || |||| ||||  |||||||||||||||||| |||    
T  6722804 aggtctagatagcgcaaaagctttaaattccttatctcatcggatagctctaagaggttgcaaccagagaaagacagcatccgcaaatattttagtcttg 6722705  T
Q  327 aaaa 330  Q
    ||||    
T  6722704 aaaa 6722701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 425
Target Start/End: Original strand, 7587318 - 7587370
Alignment:
Q  373 tggtactactaacaagctgcgtaatcccttgatcttagaaatgtgattcaata 425  Q
    ||||||| | || || |||||||||||||||| | ||||||||||||||||||    
T  7587318 tggtactgccaaaaaactgcgtaatcccttgaacatagaaatgtgattcaata 7587370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 1248 - 1506
Alignment:
Q  19 actcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||||||| |||||||||||||||||||||    
T  1248 actcagtgtttgaagatggtttagactccctatctgctttggcattttctttatattacagcctttaagattaagatggcgtaaactcacaagtttgtaa 1347  T
Q  119 aattttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg 218  Q
    ||||||||||||||| ||||||| | | ||||   |||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1348 aattttgaagggagtatagtcaacttataacaatgttccaatatcagtgtctctaatttgtacagcttacaaattgagtcaggcaacctttcaattaatg 1447  T
Q  219 attcagttaggtttagatatcgcaaaagctttagatttcctatctcacctgatagctct 277  Q
    ||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1448 attgagtcaggtttagatatcgcaaaagctttagatttccaatctcacctgatagctct 1506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 21 - 363
Target Start/End: Complemental strand, 6574266 - 6573924
Alignment:
Q  21 tcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaa 120  Q
    ||||||| ||||||||||||||  ||||||||| ||||||||| ||||  ||| ||  ||  |  | ||||||||||||||||||  | |||||||||||    
T  6574266 tcagtgtctgaagatggtttagcttccctatcttctttggcatcttcttaatatcagtgctattcatattaagatgacgtaaactgtcgagtttgtaaaa 6574167  T
Q  121 ttttgaagggagtttagtcaattcagaacagccttccagcatcagagtctctaatttgtacagcttacaaattgagtcaggcaacctttcaat--taatg 218  Q
     | |||||||||||  |||||||||| ||||||||||||  | || |||||||| ||  ||| |||||| || || | || |||||||| |||  || ||    
T  6574166 atctgaagggagttcggtcaattcagtacagccttccagtgttagtgtctctaaattacacatcttacatatggaattagtcaaccttttaatcttattg 6574067  T
Q  219 attcagttaggtttagatatcgcaaaagctttagatttcctatctcacctgatagctcttcgagtctacaatcacagaatgacaatatccgcaaatattt 318  Q
      | | | |||| |||||| ||||||||||||| |||  |||||||| ||| || ||||  ||||  |||| || |||||||||| ||||||||||||||    
T  6574066 --taactcaggtctagatagcgcaaaagctttaaattgactatctcatctgctaactctgtgagttcacaaccatagaatgacaacatccgcaaatattt 6573969  T
Q  319 tagttttgaaaatagatcacgttgcaaattgttgcttatcatgaa 363  Q
     |||||||||||||||||||||||||  |||||||| ||||||||    
T  6573968 cagttttgaaaatagatcacgttgcacgttgttgctcatcatgaa 6573924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 492
Target Start/End: Complemental strand, 6573866 - 6573762
Alignment:
Q  388 gctgcgtaatcccttgatcttagaaatgtgattcaatattcccgcaccatcatcacaatcaagagagcagcaaacgtgtcgtgttctttcagatttatct 487  Q
    ||||||||||||||| ||| || ||||||| ||||||||||  |||||||| ||  || |||| ||||| ||||  || ||||| ||||||||| |||||    
T  6573866 gctgcgtaatcccttaatcatataaatgtgcttcaatattctagcaccatcttccaaaccaagggagcaccaaatatgacgtgtcctttcagatatatct 6573767  T
Q  488 tgcac 492  Q
    |||||    
T  6573766 tgcac 6573762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 811 - 681
Alignment:
Q  21 tcagtgtttgaagatggtttagactccctatctgctttggcattttctctataacacagccttcaagattaagatgacgtaaactcacaagtttgtaaaa 120  Q
    ||||||||||||||| ||||||| |||  ||||| |||||||| ||||  ||| ||  |||||  ||||||||||||||||||||   ||||||||||||    
T  811 tcagtgtttgaagatcgtttagattcctgatctgttttggcatcttcttaatatcattgccttttagattaagatgacgtaaactggaaagtttgtaaaa 712  T
Q  121 ttttgaagggagtttagtcaattcagaacag 151  Q
     | |||||||||||| |||||||||||||||    
T  711 atatgaagggagtttggtcaattcagaacag 681  T

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