View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_low_5 (Length: 474)
Name: NF15458_low_5
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 177 - 455
Target Start/End: Complemental strand, 15802229 - 15801951
Alignment:
| Q |
177 |
ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccagtcatatataaaatgacatttttctcatgaac |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
15802229 |
ggaatccttaacttgctatttggtaactaaaaagcaacacataaaatttctgcttaaacccttacccaatcatatataaaatgacatttttctcatgaac |
15802130 |
T |
|
| Q |
277 |
taacttctccaaaaactttggacaaacactcgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaaaatag |
376 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
15802129 |
taacttctccaaaaactttggacaaacacttgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtaaaaaaacatttctgaaacatag |
15802030 |
T |
|
| Q |
377 |
ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggcc |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15802029 |
ttttatttttatcttcaaagatcgtgaaggatgacaaaaattcaaaatgcaatgtagaattcttacggtttgttcggcc |
15801951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 148
Target Start/End: Complemental strand, 15802397 - 15802258
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
15802397 |
acattatcaagttgcaacaatcgcaatttcttcattttcttaagagcaattgtattgaagcaaactctactggtcctttgcgacttcaaaaccaatccct |
15802298 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagaccatag |
148 |
Q |
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| T |
15802297 |
cgatggcttttgttccctgtgacacaaagaaagaccatag |
15802258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 144
Target Start/End: Original strand, 3392245 - 3392380
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
| |
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|||| ||||||||||||||||| |||| |||||||||||| |||||||||||||| |||||||||||| ||||| || ||||||||| ||||||||||| |
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| T |
3392245 |
acattatcaagttgcaacaatctcaatctcttcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct |
3392344 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagacc |
144 |
Q |
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| T |
3392345 |
cgatggcttttgttccctgtgacacaaagaaagacc |
3392380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 3363639 - 3363504
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||| | ||||||||| |||||||||||||| |||||||||||| ||||| || ||||||||| ||||||||||| |
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| T |
3363639 |
acattatcaagttgcaacaatctcaatctaatcattttctcaaaagcaattgtatcaaagcaaactctattggtctttggcaacttcataaccaatccct |
3363540 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagacc |
144 |
Q |
| |
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| T |
3363539 |
cgatggcttttgttccctgtgacacaaagaaagacc |
3363504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 3314328 - 3314192
Alignment:
| Q |
9 |
acatcatcaagttgcaacaatcgcaatttcttcattttcttaaaagcaattgtattgaagcaaactctactggtcctttgcaacttcaaaaccaatccct |
108 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||||| |||| | |||| || ||| | ||||||||||| |||||||||||||| ||||||||||| |
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| T |
3314328 |
acatgatcaagttgcaacaatctcaatctcttcattttctcaaaaccgattgcatcgaaaccaactctactggacctttgcaacttcataaccaatccct |
3314229 |
T |
|
| Q |
109 |
cgatggcttttgttccctgtaacacaaagaaagaccata |
147 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |
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| T |
3314228 |
cgatggcttttgttccctgtgacac--agaaagaccata |
3314192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 434
Target Start/End: Original strand, 3392537 - 3392672
Alignment:
| Q |
295 |
tggacaaacactcgtgagatgatgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaaaatagttttatttttatcttcaa |
394 |
Q |
| |
|
|||||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| || ||||||| || |
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| T |
3392537 |
tggacagacacatgtgagataatgaatcccacaattttcagccaatagattggaaaagt--aaatacatttctgaaacatagttt--ttgttatctttaa |
3392632 |
T |
|
| Q |
395 |
agatcgtgaaggatgacaaaaattcaaaatgcaatgtaga |
434 |
Q |
| |
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|||| ||||| ||||||||| ||||||||| ||||||||| |
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| T |
3392633 |
agatagtgaaagatgacaaacattcaaaatacaatgtaga |
3392672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 316 - 432
Target Start/End: Complemental strand, 3363325 - 3363213
Alignment:
| Q |
316 |
atgaatcccacaattttcagccaatagatgggaaaagtnnnnnnncatttctgaaaaatagttttatttttatcttcaaagatcgtgaaggatgacaaaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||| | ||||||| |||||| ||||| ||||||||| |
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| T |
3363325 |
atgaatcccacaattttcagccaatagattggaaaattaaaaa--catttctgaaacatagtttt--tgttatctttaaagatagtgaaaaatgacaaaa |
3363230 |
T |
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| Q |
416 |
attcaaaatgcaatgta |
432 |
Q |
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|||||||||||||||| |
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| T |
3363229 |
gttcaaaatgcaatgta |
3363213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 3363418 - 3363373
Alignment:
| Q |
248 |
atatataaaatgacatttttctcatgaactaacttctccaaaaactt |
294 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
3363418 |
atatataaaatgacatcattctcatgaactaac-tctccaaaaactt |
3363373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 293
Target Start/End: Original strand, 3392466 - 3392510
Alignment:
| Q |
248 |
atatataaaatgacatttttctcatgaactaacttctccaaaaact |
293 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
3392466 |
atatataaaatgacatcattctcatgaactaac-tctccaaaaact |
3392510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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