View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_low_6 (Length: 430)
Name: NF15458_low_6
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_6 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 430
Target Start/End: Complemental strand, 37112304 - 37111893
Alignment:
| Q |
18 |
tagaatagatacaattactcgaaaaggtggcatcgaagtattagaggtataagccaatcatttttaggagagtaactcttaaaccaaccttttaatgata |
117 |
Q |
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| T |
37112304 |
tagaatagatacaattactcgaaaaggtggcatcgaagtattagaggtataagccaatcatttttaggagagtaactcttaaaccaaccttttaatgata |
37112205 |
T |
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| Q |
118 |
attctttatattcttttgtgttgatttatcatttttataattcaatgtaacattgaacattgttttatcaataatatcctaattaaacttaaaatgacaa |
217 |
Q |
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| T |
37112204 |
at-ctttatattcttttgtgttgatttatcatttttataattcaatgtaacattgaacattgttttatcaataatatcctaattaaacttaaaatgacaa |
37112106 |
T |
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| Q |
218 |
ctaaaagagaacggtgagattgagggagggattattaatagtttgaatttgatactggtttgtgtttatacaaattttcttcttatacttcaggtgggtc |
317 |
Q |
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| T |
37112105 |
ctaaaaaagaagggtgagattgagggagggattattaatagtttgaatttgatactggtttgtgtttatacaaattttcctcttatacttcaggtgggtc |
37112006 |
T |
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| Q |
318 |
atttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgccgcagtagctcga |
417 |
Q |
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| T |
37112005 |
atttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacatcctctttgagtatatcataggcaacgccgcggtagctcga |
37111906 |
T |
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| Q |
418 |
tcatggacctcct |
430 |
Q |
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| T |
37111905 |
tcatggacctcct |
37111893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 306 - 430
Target Start/End: Complemental strand, 37120272 - 37120148
Alignment:
| Q |
306 |
ttcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgcc |
405 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||| |||| |||||||| |
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| T |
37120272 |
ttcaggtgggtcatttgcttacttgagagtagaaatgggagattttgttgccttcatagctgccggaaacatcctccttgaatatgtcattggcaacgcg |
37120173 |
T |
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| Q |
406 |
gcagtagctcgatcatggacctcct |
430 |
Q |
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| T |
37120172 |
gcggtagctcgatcatggacctcct |
37120148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 430
Target Start/End: Original strand, 37135982 - 37136105
Alignment:
| Q |
307 |
tcaggtgggtcatttgcttacttaagagtagaattgggagattttgttgcctttatagctgccggaaacattctccttgagtatatcataggcaacgccg |
406 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||| ||| | ||||| || | |
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| T |
37135982 |
tcaggtgggtcatttgcatacttaagagtagaattgggagactttgtggccttcatagctgctggaaacatactccttgaatatgttataggagcagcag |
37136081 |
T |
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| Q |
407 |
cagtagctcgatcatggacctcct |
430 |
Q |
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| T |
37136082 |
ccgtagctcgatcatggacctcct |
37136105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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