View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15458_low_9 (Length: 379)
Name: NF15458_low_9
Description: NF15458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15458_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 2794671 - 2794308
Alignment:
| Q |
16 |
ttatactcttctccaagttcttctccctctctatagtagaggctttcacaacatataactcctccaaaattgactccaaattcgaccccttcatctcttc |
115 |
Q |
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| T |
2794671 |
ttatactcttctccaagttcttctccctctctatagtagaggctttcacagcatataactcctccaaaattgactccaaattcgaccccttcatctcttc |
2794572 |
T |
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| Q |
116 |
ctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaacttaacaagactaaac |
215 |
Q |
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| T |
2794571 |
ctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcattagaaacttaacaagactaaac |
2794472 |
T |
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| Q |
216 |
ttattcaaatcaaaataccccagcaacctcttctccacttctcggtcatcatcctcacacaaaaccttccacaccacttcagccagccttagacaatttt |
315 |
Q |
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| T |
2794471 |
ttattcaaatcaaaataccccaacaacctcttctccacttctctgtcatcagcctcacccaaaaccttcaacacctcttcagcaagccttcgacaatttt |
2794372 |
T |
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| Q |
316 |
ctgcattaatctctggtccaaaaacccacaaaattctcctctgaagcaaatacgctacaatatc |
379 |
Q |
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| T |
2794371 |
ccggatcaatctctggtccaaaagccggcgagattttcctctgaagccaatacgcatcaatatc |
2794308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 219
Target Start/End: Complemental strand, 29262049 - 29261933
Alignment:
| Q |
103 |
ccttcatctcttcctcaattttatccctctcttcttgatccctcgccctggccaagctagtacaccacacaatcttcaacttattctgcatcagaaactt |
202 |
Q |
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| T |
29262049 |
ccttcatctcttcctcaatcgtctctctctcttcctgatcttgtgccctcgccaaacgagtacaccacaaaattttcagcctatttcgcaacaaaaactt |
29261950 |
T |
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| Q |
203 |
aacaagactaaacttat |
219 |
Q |
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| T |
29261949 |
aataagactaaacttat |
29261933 |
T |
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