View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15459_low_1 (Length: 542)
Name: NF15459_low_1
Description: NF15459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15459_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 52996571 - 52996918
Alignment:
| Q |
19 |
catcccacatgaataatggaatccacatatgaatccacattttccatgttattttcatcattatttcaataaataaaaacccaaactaaattacaatcaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52996571 |
catcccacatgaataatggaatccacatatgaatccacattttccatgttattttcatcattatttcaataaataaaaacccaaactaaattacaatcaa |
52996670 |
T |
|
| Q |
119 |
tattgctttctttgattgcttcaccgaacacattcacatggaaactcaaatttgaagctttgtctttcatgagtccaacccgtatctaaagataaatcca |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52996671 |
tattgctttctttgattgcttcactgaacacattcacatggaaactcaaatttgaagctttgtctttcatgagtccaacccgtatctaaagataaatcca |
52996770 |
T |
|
| Q |
219 |
ttgtaattg--------tagaaacggaaaataaatagtagatggtttcacac-aaaaataaagaagttaataaaaaattactttaaaggaatgtggtact |
309 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52996771 |
ttgtaattgtacactactagaaacggaaaataaatagtagatggtttcacacaaaaaaaaaagaagttaataaaaaattactttaaaggaatgtggtact |
52996870 |
T |
|
| Q |
310 |
ataattgatattactttgtatttcaatttacttgatatataaaactac |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52996871 |
ataattgatattactttgtatttcaatttacttgatatataaaactac |
52996918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University