View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15459_low_3 (Length: 276)
Name: NF15459_low_3
Description: NF15459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15459_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 128 - 258
Target Start/End: Complemental strand, 37442325 - 37442195
Alignment:
| Q |
128 |
catggattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37442325 |
catggattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctc |
37442226 |
T |
|
| Q |
228 |
ttgttatcaccaaaaacttgatctccatttt |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
37442225 |
ttgttatcaccaaaaacttgatctccatttt |
37442195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 258
Target Start/End: Complemental strand, 34940106 - 34939984
Alignment:
| Q |
132 |
gattgaggatagaaatggtagtggatttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctcttgt |
231 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||| ||| |||||||||||||||||||||||| ||||||||| | ||||||||||| | |
|
|
| T |
34940106 |
gattgaggacagaaatggatgtggatttgttgtctctacaggtaa----caacttatctgttgtgtagaggatttggaccagtgtacactttcctctttt |
34940011 |
T |
|
| Q |
232 |
tatcaccaaaaacttgatctccatttt |
258 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
34940010 |
catcaccaaaaacttgatctccatttt |
34939984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 37442430 - 37442370
Alignment:
| Q |
24 |
atattaaacctatacactcatactgctcaaaaaatatgcttccaaagtgtaatatatgaag |
84 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37442430 |
atattaaacctatatactcatactgctcaaaaaatatgcttccaaagtgtaatatatgaag |
37442370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University