View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15459_low_4 (Length: 233)
Name: NF15459_low_4
Description: NF15459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15459_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 9912367 - 9912581
Alignment:
| Q |
3 |
tgtttctaggaaacattcaatgtcagaaaaataaccatctaaataaacatgtcaaatcggctcgaaaaaccagcacatccccttggctactagaaaaaca |
102 |
Q |
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| T |
9912367 |
tgtttctaggaaacattcaatgtcaaaaaaacaatcatctaaataaacatgtcaattcggctcgaaaaaccggcacatccccttggctactagaaaaaca |
9912466 |
T |
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| Q |
103 |
gaccataaaagtacctctatgattacggaaaataccaccaccaaaaaccttactagcacacaaagaaccataagtatttatcttaacccatctgcattta |
202 |
Q |
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| T |
9912467 |
gaccatagaagtacttctatgattacggaaaataccaccgccaaaaaccttactagcacacaaagaaccataagtatttatcttaacccatctgcattta |
9912566 |
T |
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| Q |
203 |
tatggattttaattt |
217 |
Q |
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| T |
9912567 |
tatggattttaattt |
9912581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32430626 - 32430666
Alignment:
| Q |
1 |
tgtgtttctaggaaacattcaatgtcagaaaaataaccatc |
41 |
Q |
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| T |
32430626 |
tgtgtttataggaaacattcaatgtcagaaaagcaaccatc |
32430666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5617974 - 5618015
Alignment:
| Q |
1 |
tgtgtttctaggaaacattcaatgtcagaaaaataaccatct |
42 |
Q |
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| T |
5617974 |
tgtgtttctaggaaacattcaatgtcagaaaagcaaccatct |
5618015 |
T |
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