View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_1 (Length: 896)
Name: NF1545_high_1
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 58 - 487
Target Start/End: Original strand, 30105822 - 30106255
Alignment:
| Q |
58 |
ttggaattccaactgtcaataactactcatctagaccatc---tagaacatctctaaaatgcctgatcttaatcaaacaatcaataaaataagataactt |
154 |
Q |
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||||| |||||||||||| |||||||||||| |||| | |||||||||||||||| ||||||| |||||||||||| |||||||||| |||||| |
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| T |
30105822 |
ttggatttccaactgtcactaactactcatcctcaccaactagtagaacatctctaaaacatctgatctcaatcaaacaatcgataaaataagttaactt |
30105921 |
T |
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| Q |
155 |
taacnnnnnnncaaattaaaattatccaatttaaaatttaaattggccgatctcaatcaaactatcacagatcatctgactacataaatgcgtacagtta |
254 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |
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| T |
30105922 |
taacttttattcaaattaaaattatcaaatttaaaatttaaattgtccgatctcaatcaaactatcaccgatcatctgactaaataaatgcgtacagtca |
30106021 |
T |
|
| Q |
255 |
atgacaaagaggggatcaccactaagaccaaccaaaaatagagtcactctt-tgagtcttttctccctcttctcctcttgttgtcataacctgataaata |
353 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30106022 |
atgacaaagagaggatcaccactaagaccaaccaaaaatagagtcactcttgggagtcttttctccctcttctcctcttgttgtcataacctgataaata |
30106121 |
T |
|
| Q |
354 |
atcactccaattatatttccacactatgaacaagtaaagtaaaacccaaactaaataaaccctcacactaatttatttcttcaatcatcatcatcatctc |
453 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30106122 |
atcactccaattatatttccacactatgaacaagtaaagtaaaacccaaactaaataaaccctcatactaatttatttcttcaatcatcatcatcatctc |
30106221 |
T |
|
| Q |
454 |
ttcactaaaatccaaaccccaaaacctggtacct |
487 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30106222 |
ttcactaaaatccaaaccccaaaacctggtacct |
30106255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 604 - 880
Target Start/End: Original strand, 30106372 - 30106648
Alignment:
| Q |
604 |
ggttgccggcgatgccgacgccggtaagctccgctcgtcaattcctaaccgacgaagcggcgcgtgccctcgacgacgcagtagccgtcgcacgccgtcg |
703 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30106372 |
ggttgccggcgatgccgacgccggtaagctccgctcgtcaattcctaaccgacgaagcggcgcgtgccctcgacgacgcagtagccgtcgcacgccgtcg |
30106471 |
T |
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| Q |
704 |
cagccatgcacaaacaacctcccttcacaccatctccgccttactctccctcccatcttcatccctccgcgacgccatctgccgagctcgaaccgcagtt |
803 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30106472 |
cagccatgcacaaacaacctcccttcacaccatctccgccttactctccctcccatcttcatccctccgcgacgccatctgccgagctcgaaccgccgtt |
30106571 |
T |
|
| Q |
804 |
agattcccgtcattctcgcaccgtcttcacctccgagcactcgagctctccgtcggcgtatccctcgaccgcctccc |
880 |
Q |
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| T |
30106572 |
agattcccgtcattctcgcaccgtcttcacctccgagcacttgagctctccgtcggcgtatccctcgaccgcctccc |
30106648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 606 - 757
Target Start/End: Original strand, 25772762 - 25772913
Alignment:
| Q |
606 |
ttgccggcgatgccgacgccggtaagctccgctcgtcaattcctaaccgacgaagcggcgcgtgccctcgacgacgcagtagccgtcgcacgccgtcgca |
705 |
Q |
| |
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||||||| ||||||||||||||||||| | || || |||| ||||||||||||| |||||||| || ||||| ||||| | || || || | || | |
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| T |
25772762 |
ttgccggtgatgccgacgccggtaagcacagcgcgccaatgtttaaccgacgaagcagcgcgtgcactagacgaagcagtttctgtagcgcgtagacgta |
25772861 |
T |
|
| Q |
706 |
gccatgcacaaacaacctcccttcacaccatctccgccttactctccctccc |
757 |
Q |
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|||| | ||||||||||| || ||| ||||||| ||||||||||| ||||| |
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| T |
25772862 |
gccaccctcaaacaacctctctccacgccatctcagccttactctctctccc |
25772913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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