View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_21 (Length: 429)
Name: NF1545_high_21
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 2 - 420
Target Start/End: Original strand, 13800109 - 13800530
Alignment:
| Q |
2 |
catcatcataagagtttggttcttggacaatattgtaatacgaagtggggttctgagattcaaaaagcaaagttggacgatatgccaaattgagtgatac |
101 |
Q |
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| T |
13800109 |
catcatcataagagtttggttcttggacaatattgtaatacgaagtggggttctgagattcaaaaatcaaagttggacgatatgccaaattgagtgatac |
13800208 |
T |
|
| Q |
102 |
aaggtgaggcttggtaccaaaatctgacagtaggcacatgatattggaagaatggaagataatgaatcagaatctacagtgaaattaatgtcgacataag |
201 |
Q |
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| T |
13800209 |
aaggtgaggcttggtaccaaaatctgacagtaggcacatgatattggaagaatggaagataatgaatcagaatctacagtgaaattaatgtcgacataag |
13800308 |
T |
|
| Q |
202 |
gatctgattcttttacca---tttctccttcaagatgaatccttagcctcctctgccacctttgtttgtcgcccattagcagcaaaacttctctatgctc |
298 |
Q |
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| T |
13800309 |
gatctgattcttttaccattttttctccttcaagatgaatccttagcctcctctgccacctttgtttgtcgcccattagcagcaaaacttctccatgctc |
13800408 |
T |
|
| Q |
299 |
tgttttacaacaccacaaaaaggcagttacaaatgatattcaacctgaatgtggataatgttagtgccaccaaggacgagcacatccgcgcatcgcagtc |
398 |
Q |
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| T |
13800409 |
tattttacaacaccacaaaaaggcagttacaaatgatattcaacctgaatgtggataatgttagtgccaccaaggacgagcacatccacgcatcgcagtc |
13800508 |
T |
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| Q |
399 |
acaacttgtgccaacttctctg |
420 |
Q |
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| T |
13800509 |
acaacttgtgccaacttctctg |
13800530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 110
Target Start/End: Complemental strand, 100839 - 100730
Alignment:
| Q |
3 |
atcatcataagagtttggttcttggacaatattgtaatacgaa--gtggggttctgagattcaaaaagcaaagttggacgatatgccaaattgagtgata |
100 |
Q |
| |
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||||||| |||||||||||| |||| |||| |||||||| ||| |||||||| | |||||||||| ||||||||| ||||||| ||| |||||||| |
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| T |
100839 |
atcatcacaagagtttggttattgggcaattttgtaataggaagtgtggggttgttggattcaaaaaccaaagttggtcgatatgttaaactgagtgatg |
100740 |
T |
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| Q |
101 |
caaggtgagg |
110 |
Q |
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| T |
100739 |
caaggtgagg |
100730 |
T |
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