View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1545_high_22 (Length: 418)
Name: NF1545_high_22
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 29 - 339
Target Start/End: Original strand, 14525291 - 14525601
Alignment:
| Q |
29 |
gtattaaattattgaatttgggtgttttgggggcggtcgtgtacataatgattcaaaatagaggtaaatatatacnnnnnnngagggcaggggtaaatat |
128 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
14525291 |
gtatcaaattattgaatttgggtgttttgggggcggtcgtgtacataatgattcaaaatagaggtaaatatatacttttttttagggcaggggtaaatat |
14525390 |
T |
|
| Q |
129 |
attttaaaaataactcgttttgttgataccatattttaagtaaggagtttagtttacgacggttgtcatcaaaatcaaattctctgagtttggcaaataa |
228 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||| | |
|
|
| T |
14525391 |
attttaagaataactcgttttgttgataccatattttaagtaaggagtttagtttacgacggttatcaccaaaatcaaattctttgagtttgacaaatga |
14525490 |
T |
|
| Q |
229 |
cttgtaaacatgttgttaaattaatcatgttgaagattacctataatcgttacgagtggacatcggaaaatatttcatttcaaactatgaatgagtttga |
328 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| || |||||||||||||||||| |||||||||||||| |
|
|
| T |
14525491 |
cttgtaaacatgttattaaattaatcatgttgaagatcacctataatcgatacgagtggacattgggaaatatttcatttcaaacgatgaatgagtttga |
14525590 |
T |
|
| Q |
329 |
aggctctagaa |
339 |
Q |
| |
|
||||||||||| |
|
|
| T |
14525591 |
aggctctagaa |
14525601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 350 - 403
Target Start/End: Original strand, 14525929 - 14525981
Alignment:
| Q |
350 |
aacttatgtgttacatgcatattacaaatttaagcaagaattccatatcctaat |
403 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14525929 |
aacttatgt-ttacatgcatattacaaatttaagcaagaattccatatcctaat |
14525981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University