View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_26 (Length: 353)
Name: NF1545_high_26
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_26 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 34643679 - 34643366
Alignment:
| Q |
20 |
ttcaccccatgactaccaccgcttccaatttctccatcccatggccttgtctaatttctcaaactgatccacctcatgtaaccacataatttctctatcc |
119 |
Q |
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| T |
34643679 |
ttcaccccatgactaccaccgcttccaatttctccatcccatggccttgtctaatttctcaaaccgatccacctcatgtaaccacataatttctctatcc |
34643580 |
T |
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| Q |
120 |
cattaaccatgatactgctctaacagttccagttaagtacactgtataaaagggtcacagattcacgcgtccaagccgtcgatagttgatgatgaacaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34643579 |
cattaaccatgatactgctctaacagttccagttaagtacactgtataaaagggtcacagattcacgcgtccaagccgtcgatagttgatgatgaacaat |
34643480 |
T |
|
| Q |
220 |
aactgaaaccctatgagttggagccttccacggccgcccatgcctccggcgacactcacctcttccatcttcggcaacgttcgtttgaaaatatctctct |
319 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
34643479 |
aactgaagccctatgagttggagccttccacggccgcccatgcctccggcgaca------tcttccatctccggcaacgttcgtttgaaaatatctctct |
34643386 |
T |
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| Q |
320 |
tccatctttgggtttttcat |
339 |
Q |
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|||||||||||||||||||| |
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| T |
34643385 |
tccatctttgggtttttcat |
34643366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 173 - 338
Target Start/End: Complemental strand, 46902902 - 46902737
Alignment:
| Q |
173 |
gtcacagattcacgcgtccaagccgtcgatagttgatgatgaacaataactgaaaccctatgagttggagccttccacggccgcccatgcctccggcgac |
272 |
Q |
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|||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
46902902 |
gtcacagattcacgcgtccatgccgtcgacggttgatgatgagcagtaactgaaaccctgtgagttggagccttccacgaccgcccatgcctccggcgac |
46902803 |
T |
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| Q |
273 |
actcacctcttccatcttcggcaacgttcgtttgaaaatatctctcttccatctttgggtttttca |
338 |
Q |
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|||||||||||| |||| | ||| ||||||||||||| | |||||||||||||||||||| ||||| |
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| T |
46902802 |
actcacctcttcaatctccagcagcgttcgtttgaaattgtctctcttccatctttgggtatttca |
46902737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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