View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_28 (Length: 340)
Name: NF1545_high_28
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 138 - 327
Target Start/End: Complemental strand, 37686834 - 37686645
Alignment:
| Q |
138 |
atgtaggggtctaagccttggaggtacactggtgtggaagagaatgtggagagggaagatataaagatgttggtgaagaaatggtgggatgtatatgaag |
237 |
Q |
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| T |
37686834 |
atgtaggggtctaagccttggaggtacactggtgtggaagagaatatgcagagagaagatataaagatgttggtgaagaaatggtgggatgtatatgaag |
37686735 |
T |
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| Q |
238 |
atgagagtttggattacaagcagcctgttaatgcaaatcatttggcttcagcaattttggaagcttctgatttgaaggttgtcccagctc |
327 |
Q |
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| T |
37686734 |
atgagagtttggattacaagcaacctgttaatgcaaatcatttggcttcagcaattttggaagcttctgatttgaaggttgtcccagctc |
37686645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 138 - 327
Target Start/End: Original strand, 37698684 - 37698873
Alignment:
| Q |
138 |
atgtaggggtctaagccttggaggtacactggtgtggaagagaatgtggagagggaagatataaagatgttggtgaagaaatggtgggatgtatatgaag |
237 |
Q |
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| T |
37698684 |
atgtaggggtctaagccttggaggtacactggtgtggaagagaatatgcagagagaagatataaagatgttggtgaagaaatggtgggatgtatatgaag |
37698783 |
T |
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| Q |
238 |
atgagagtttggattacaagcagcctgttaatgcaaatcatttggcttcagcaattttggaagcttctgatttgaaggttgtcccagctc |
327 |
Q |
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| T |
37698784 |
atgagagtttggattacaagcaacctgttaatgcaaatcatttggcttcagcaattttggaagcttctgatttgaaggttgtcccagctc |
37698873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 37686949 - 37686873
Alignment:
| Q |
14 |
agaaagtcaaagttgttcattactgtgcagcggtatgnnnnnnnaatatttccaatcaactaagcccttaagtgtcct |
91 |
Q |
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| T |
37686949 |
agaaagtcaaagttgttcattactgtgcagcggtatg-ttttttaatatttccaatcaactaagcccttaagtgtcct |
37686873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 37698569 - 37698645
Alignment:
| Q |
14 |
agaaagtcaaagttgttcattactgtgcagcggtatgnnnnnnnaatatttccaatcaactaagcccttaagtgtcct |
91 |
Q |
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| T |
37698569 |
agaaagtcaaagttgttcattactgtgcagcggtatg-ttttttaatatttccaatcaactaagcccttaagtgtcct |
37698645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 257
Target Start/End: Original strand, 55222626 - 55222742
Alignment:
| Q |
141 |
taggggtctaagccttggaggtacactggtgtggaagagaatgtggagagggaagatataaagatgttggtgaagaaatggtgggatgtatatgaagatg |
240 |
Q |
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|||||||||||||| |||||||||||||| |||||| | ||| || | || || ||||||||||||||||||||||| ||||||||||| ||||| || | |
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| T |
55222626 |
taggggtctaagccatggaggtacactggagtggaacaaaatatgcaaagagaggatataaagatgttggtgaagaagtggtgggatgtgtatgaggacg |
55222725 |
T |
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| Q |
241 |
agagtttggattacaag |
257 |
Q |
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| T |
55222726 |
aaagcttggactacaag |
55222742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 256
Target Start/End: Complemental strand, 45943911 - 45943797
Alignment:
| Q |
142 |
aggggtctaagccttggaggtacactggtgtggaagagaatgtggagagggaagatataaagatgttggtgaagaaatggtgggatgtatatgaagatga |
241 |
Q |
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|||| ||||||||||||||||| || || | |||| |||| |||| || ||||| ||||||||| |||||||||||||| || ||||||||||||| |
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| T |
45943911 |
agggctctaagccttggaggtataccggagaggaacagaacatggacagagaagacataaagatgctggtgaagaaatggaaagagatatatgaagatga |
45943812 |
T |
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| Q |
242 |
gagtttggattacaa |
256 |
Q |
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|| || |||||||| |
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| T |
45943811 |
gacattagattacaa |
45943797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 20395328 - 20395362
Alignment:
| Q |
14 |
agaaagtcaaagttgttcattactgtgcagcggta |
48 |
Q |
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| T |
20395328 |
agaaagtcaaagttgttcattactgtgcagcggta |
20395362 |
T |
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