View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_35 (Length: 300)
Name: NF1545_high_35
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2064301 - 2064010
Alignment:
| Q |
1 |
cagactatcggcttcgatttcatcgcgaacggcgtcgtttcggagttctggaagattcttcgccggaggtggaagtagtcgcagaattgaaccggttgat |
100 |
Q |
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| T |
2064301 |
cagactatcggcttcgatttcatcgcgaacggcgtcgtttcggagttctggaagattcttcgccggaggtggaagtagtcgcagaattgaaccggttgat |
2064202 |
T |
|
| Q |
101 |
tatgacgttgaaggtaacagaattggtgaagaaattagtgaaatgtttcggtggctttcaggggtatgattggtaaagtacattaacatttaggtttata |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064201 |
tatgacgttgaaggtaacagaattggtgaagagattagtgaaatgtttcggtggctttcaggggtatgattggtaaagtacattaacatttaggtttata |
2064102 |
T |
|
| Q |
201 |
aatttcgatataannnnnnnnnnnnnaatctttgtaaacatttgctactatgttatttggcttcacttttgattttcctttgaggctttaga |
292 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2064101 |
aatttcgatataatttttttatttttaatctttgtaaacatttgctactatgttatttggcttcacttttgattttcctttgaggctttaga |
2064010 |
T |
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