View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_36 (Length: 298)
Name: NF1545_high_36
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 285
Target Start/End: Original strand, 36149135 - 36149400
Alignment:
| Q |
20 |
ggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctcagcaccataag |
119 |
Q |
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| T |
36149135 |
ggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctcagcaccataag |
36149234 |
T |
|
| Q |
120 |
taccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149235 |
taccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttt |
36149334 |
T |
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| Q |
220 |
tgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttc |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36149335 |
tgtctctgcatcagtctcatcttccttcacgtgtgctacttcttgtccttgattaggagagtgttc |
36149400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 36083238 - 36083412
Alignment:
| Q |
20 |
ggatatgcttgaaactgttcctttgttatcattaggttaagaactgaatcacctacatattccaaacgttcatatgataagccattctcagcaccataag |
119 |
Q |
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|||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||| |
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| T |
36083238 |
ggatatgcatgaaattgttccgttgttatcattaggttaagaactgaatcacctatgtattccaaacgctcataagataagccattctcagcaccgtaag |
36083337 |
T |
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| Q |
120 |
taccatgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgca |
194 |
Q |
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| T |
36083338 |
tacagtgagtgaaagcctcttctagcaatagtatgttcttaaattcgtattctagaattgcttccacttcatgca |
36083412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 125 - 263
Target Start/End: Complemental strand, 26527763 - 26527625
Alignment:
| Q |
125 |
tgagtgaaagcctcttctagtaatagtttgttcttaaattcgtattcaagaatggcttcaacttcatgcaatggtggtggagagtcattttcttttgtct |
224 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| ||||| |
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| T |
26527763 |
tgagtgaaagcctcttctagtaatagtttgttcttgaattcgtattcaagaatggcttccacttcatgcggtggtggtggagaatcattttcttctgtct |
26527664 |
T |
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| Q |
225 |
ctgcatcagtctcatcttccttcacgtgtgctacttctt |
263 |
Q |
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| |||||| |||||| |||||||| |||| || |||||| |
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| T |
26527663 |
ccgcatcattctcattttccttcatgtgttcttcttctt |
26527625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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