View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_40 (Length: 280)
Name: NF1545_high_40
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_40 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 44632200 - 44632477
Alignment:
| Q |
12 |
cacagacagtaaaacctacaaacaaacatttccatgtaaaagaagggcttatagaaggaccactaatcccgcatataacagagggtttcacagttggaaa |
111 |
Q |
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| T |
44632200 |
cacagacagtaaaacctacaaacaaacatttccatataaaagaagggcttatagaaggaccactaatcccgcatataacagagggtttcacagttggaaa |
44632299 |
T |
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| Q |
112 |
actacattattatcttattcataaactaagaagatcaactacactagagtgcagcagc---------agcagtagcagtggagggtaagtaaccacgaca |
202 |
Q |
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| T |
44632300 |
actacattattatcttattcataaactaagaagatcaactacactagagtgcagcagcagcagcagtagcagtagcagtggagggtaagtaaccacgaca |
44632399 |
T |
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| Q |
203 |
ataatcaaaaccataccaaacaccattagggataaaagcattgtagtaaaatgtagcaggttggtagttatgggtata |
280 |
Q |
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| T |
44632400 |
ataatcaaaaccataccaaacaccattagggataaaagcattgtagtaaaaagtagcaggttggtagttatgggtata |
44632477 |
T |
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