View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_42 (Length: 265)
Name: NF1545_high_42
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 50460075 - 50460313
Alignment:
| Q |
13 |
atggttactacggctactactagttagttatatatatgcaatgcagggcaattaatgttacttcatcacaatattataatactctatccattagtttctt |
112 |
Q |
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| T |
50460075 |
atggttactacggctactactagttagttatatatatgcaatgcagggcaattaatgttacttcatcacaatattataatactctatccattagtttctt |
50460174 |
T |
|
| Q |
113 |
cagctagtggcatgttttgtgcacattataaatctcattgattttgacacattttagcaaagaggtccatagcataaaacaatattctgatcattcagaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460175 |
cagctagtggcatgttttgtgcacattataaatctcattgattttgacacattttagcaaagaggtccatagcataaaacaatattctgatcattcagaa |
50460274 |
T |
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| Q |
213 |
cttcattactttgataacatattttatcgtgcactttct |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
50460275 |
cttcattactttgataacatattttatcgtgcactttct |
50460313 |
T |
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