View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_44 (Length: 263)
Name: NF1545_high_44
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_44 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 30314177 - 30313925
Alignment:
| Q |
11 |
taatactctaaggtcctggttgtcatctcggttagctaaataagcaatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30314177 |
taatactctaaggtcctggttgtcatctcggttagccaaataagcaatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagttt |
30314078 |
T |
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| Q |
111 |
ctattgtttgggttcaacaccgtgagtatggctttccctgcaaattacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaag |
210 |
Q |
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| T |
30314077 |
ctattgtttgggttcaacaccgtgagtatggctttccctgcaaattacaattaaagttaaatattattttaaacttattcttaccaaactaacttgtaag |
30313978 |
T |
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| Q |
211 |
ataagaaatgctatttttatatatccatacaaataaaactacgaaactaactt |
263 |
Q |
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| T |
30313977 |
ataagaaatgctatttttatatatccatacaaataaaactatgaaactaactt |
30313925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 30303308 - 30303061
Alignment:
| Q |
11 |
taatactctaaggtcctggttgtcatctcggttagctaaataagcaatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30303308 |
taatactctaaggtcctggttgtcatctcggttagccaaataagcaatgctgccggcagggagtttgatggtatcaccacgttcaaggttgaaggagttt |
30303209 |
T |
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| Q |
111 |
ctattgtttgggttcaacaccgtgagtatggctttccctgcaaattacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaag |
210 |
Q |
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| T |
30303208 |
ctattgtttgggttcaacaccgtgagtatggctttccctgcaaattaaaattaaagttaaatattattttaaacttatttttacaaaactaacttgtaag |
30303109 |
T |
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| Q |
211 |
ataagaaatgctatttttatatatccatacaaataaaactacgaaactaactt |
263 |
Q |
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| T |
30303108 |
ataagaaattatatttttata-----atacaaataaaactacgaaactaactt |
30303061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 30290619 - 30290374
Alignment:
| Q |
11 |
taatactctaaggtcctggttgtcatctcggttagctaaataagcaatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagttt |
110 |
Q |
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||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30290619 |
taatactctaaggtcctcgttgtcagctcggttagccaaataagcaatgctgccggcagggagtttgatggtatcaccacgttcaaggttgaaggagttt |
30290520 |
T |
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| Q |
111 |
ctattgtttgggttcaacaccgtgagtatggctttccctgcaaattacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaag |
210 |
Q |
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|| | ||| ||||||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||| ||||||||||||||| |
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| T |
30290519 |
ctgtcgttcgggttcaacacagtgagtatagctttccctgc------gaattaaagttaaatataattttaaacttattcctacaaaactaacttgtaag |
30290426 |
T |
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| Q |
211 |
ataagaaatgctatttttatatatccatacaaataaaactacgaaactaactt |
263 |
Q |
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| T |
30290425 |
gtaagaaatgatatttttatatatacaaacaact-aaacttcgaaactaactt |
30290374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 11 - 263
Target Start/End: Complemental strand, 30298124 - 30297875
Alignment:
| Q |
11 |
taatactctaaggtcctggttgtcatctcggttagctaaataagcaatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagttt |
110 |
Q |
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|||||||||||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
30298124 |
taatactctaagatcctcattgtcatctcggttagccaaataagcaatgctgccggcagggagtttgatagtatcaccgcgttcaaggttgaaggagttt |
30298025 |
T |
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| Q |
111 |
ctattgtttgggttcaacaccgtgagtatggctttccctgcaaattacaattaaagttaaatattattttaaacttattattaccaaactaacttgtaag |
210 |
Q |
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|| |||| |||||||||||| |||||||||||||||||||||||||| | ||||| || ||| | ||||||||| |||| ||| ||||||||||| |
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| T |
30298024 |
ctgttgtctgggttcaacacggtgagtatggctttccctgcaaattaaagttaaattt---catttaatcaaacttattcttacaaaagtaacttgtaag |
30297928 |
T |
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| Q |
211 |
ataagaaatgctatttttatatatccatacaaataaaactacgaaactaactt |
263 |
Q |
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|||||||||| ||||||||||||| || |||||||||||||| |||||||||| |
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| T |
30297927 |
ataagaaatgatatttttatatattcaaacaaataaaactacaaaactaactt |
30297875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 153
Target Start/End: Complemental strand, 30285651 - 30285513
Alignment:
| Q |
15 |
actctaaggtcctggttgtcatctcggttagctaaataagcaatgctgccagcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctat |
114 |
Q |
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|||||||| |||| |||||||||||||||||| || ||| ||| | | ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30285651 |
actctaagatccttgttgtcatctcggttagccaagtaaccaagggttccagcagggagtttgatggtatcaccacgctcaaggttgaaggagtttctat |
30285552 |
T |
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| Q |
115 |
tgtttgggttcaacaccgtgagtatggctttccctgcaa |
153 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| |
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| T |
30285551 |
tgttggggttcaacaccgtcagtatggctttccctgcaa |
30285513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 46809107 - 46809021
Alignment:
| Q |
66 |
gcagggagtttgatggtatcaccacgttcaaggttgaaggagtttctattgtttgggttcaacaccgtgagtatggctttccctgca |
152 |
Q |
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||||||||||| || |||||||| | |||||||| || |||||||||||||| | || ||||| || |||||||||||||||||| |
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| T |
46809107 |
gcagggagtttaatagtatcaccttgctcaaggttaaacgagtttctattgttggaatttaacacagtaagtatggctttccctgca |
46809021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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