View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_46 (Length: 256)
Name: NF1545_high_46
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_46 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 2101187 - 2101423
Alignment:
| Q |
4 |
acacattatcacacaggttcttt-acttaaaa--agcatctaaacggataagatttactgtagactgtaataaatctgtagtttgtggtaataaatctgt |
100 |
Q |
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| T |
2101187 |
acacattatcacacaacttcttttacttaaaaaaagcatctaaacggataagatttactgtagactgtaataaatctgtagtttgtggtaataaatctgt |
2101286 |
T |
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| Q |
101 |
aaccgtggcagtttacttttcaatcttcttcaataagtctcttcattttacttttgcattaaaaacggaaaataagagatattttcttgctaaaacgatt |
200 |
Q |
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| T |
2101287 |
aaccgtggcagtttacttttcaatcttcttcgataagtctcttcattttacttttgcattaaaaacggaaaataagacatattttcttgctaaaacgatt |
2101386 |
T |
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| Q |
201 |
ctaatatctgcctataaatagtactagtagttaccct |
237 |
Q |
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| T |
2101387 |
ctaatatctgcctataaatagtactagtagttaccct |
2101423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 39185797 - 39185758
Alignment:
| Q |
198 |
attctaatatctgcctataaatagtactagtagttaccct |
237 |
Q |
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| T |
39185797 |
attctaatatctgcctataaatagtattagtacttaccct |
39185758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 39186841 - 39186777
Alignment:
| Q |
1 |
atgacacattatcacacaggttcttt-acttaaaaa-gcatctaaacggataagatttactgtag |
63 |
Q |
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| T |
39186841 |
atgacacagtatcacacaagttcttttacttaaaaaagaatctaaacagataggatttactgtag |
39186777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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