View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_5 (Length: 606)
Name: NF1545_high_5
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 7 - 588
Target Start/End: Complemental strand, 40768147 - 40767566
Alignment:
| Q |
7 |
tcgaagaatatctgcatcgctgctagacggtctgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcgg |
106 |
Q |
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| T |
40768147 |
tcgaacaatatctgcatcgctgctagacggtccgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcgg |
40768048 |
T |
|
| Q |
107 |
cgagtccctccaccatataggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttc |
206 |
Q |
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| T |
40768047 |
cgagtccctccaccatataggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttc |
40767948 |
T |
|
| Q |
207 |
atttccttctgaaattgcagtagcacattcataaagaagttgcttgggggtcctagaaatttttgttatttctttggtggtgctactgatgctgctaata |
306 |
Q |
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| T |
40767947 |
atttccttctgaaattgcagtagcacattcataaagaagttgcttgggggtcctagaaatttttgttatttctttggtggtgctactgatgctgctaata |
40767848 |
T |
|
| Q |
307 |
ttggaatctggagacgaatactcctttggtgagtcatggtcatggaacagcagcatattctgaattggatcaggatcagcccaatcaataatgttaggat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40767847 |
ttggaatctggagacgaatactcctttggtgagtcatggtcatggaacagcagcatattctgaattggatcaggatcagcccaatcaataatgttaggat |
40767748 |
T |
|
| Q |
407 |
caatttccatggtttgagaattaccatattcctcttcttcctcaatgtcactatcatcaagtaatgccctctccaatgcttctagttttgatctcattac |
506 |
Q |
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| T |
40767747 |
caatttccatggtttgagaattaccatattcctcttcttcctcaatgtcactatcatcaagcaatgccctctccaatgcttctagttttgatctcattac |
40767648 |
T |
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| Q |
507 |
accatcaacttcaattgaatccatgcttcgattttccattatcaaatctgatccaaaactggactggtcagcaccacgttgc |
588 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40767647 |
accatcaacttcaattgaatccatgcttcgattttccattatcaaatctgatccaaaactggactgatcagcaccacgttgc |
40767566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 10093639 - 10093940
Alignment:
| Q |
15 |
tatctgcatcgctgctagacggtctgaagaaggaggttccttgcatttcaaagctctataaatactttttccggattcagcgaggcgagcggcgagtccc |
114 |
Q |
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||||||||| ||||||||||| || ||||| |||||||||||||||||||||||| ||||||||| |||||| ||| ||| | ||||| || ||||| |
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| T |
10093639 |
tatctgcattgctgctagacgatcagaagacggaggttccttgcatttcaaagctttataaatacattttcccgatgaagccaaacgagcagcaagtcct |
10093738 |
T |
|
| Q |
115 |
tccaccatataggctgcaattctttgggaaggctctccttgaattgagacaattcgtcggagattgtttatcattgacgatgcttcctcttcatttcctt |
214 |
Q |
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|||||||| |||||||||||||| | ||||| ||||| |||||||| || | | | ||||| | ||||| | || |||| |||||||||||| |
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| T |
10093739 |
tccaccatgtaggctgcaattctatccgaaggttctccctgaattgaaaccaactgcctgagatcatcgatcatagctgaggcttttacttcatttcctt |
10093838 |
T |
|
| Q |
215 |
ctgaaattgcagtagcacattcataaagaagttgcttgggggtccta-gaaatttttgt--tatttctttggtggtgctactgatgctgctaatattgga |
311 |
Q |
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|||||| ||| ||||||||||||| || | |||||| ||||||| | |||| |||||| |||||||| ||||||||||| |||| |||| ||| || |
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| T |
10093839 |
ctgaaagtgcgctagcacattcatatagtaattgcttcggggtccgaggaaagttttgtgatatttctt---tggtgctactggtgctactaagatttga |
10093935 |
T |
|
| Q |
312 |
atctg |
316 |
Q |
| |
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||||| |
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|
| T |
10093936 |
atctg |
10093940 |
T |
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