View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_55 (Length: 230)
Name: NF1545_high_55
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_55 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 44263724 - 44263921
Alignment:
| Q |
18 |
aaattcagtttcagcttcatcttgttcaacattctccatctctccgatgcttttactaaaagcaagtttcttccatttgaagaaacttttcttcttctca |
117 |
Q |
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| T |
44263724 |
aaattcagtttcagcttcatcttgttcaacattctccatctctccgatgcttttactaaaagcaagtttcttccatttgaagaaacttttcttcttctca |
44263823 |
T |
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| Q |
118 |
gccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcagnnnnnnnatctccatttgttgtgtgttcat |
215 |
Q |
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| T |
44263824 |
gccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcagtttttttatctccatttgttgtgtgttcat |
44263921 |
T |
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Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 56165459 - 56165629
Alignment:
| Q |
18 |
aaattcagtttcagcttcatcttgttcaacattctccatctctccg---atgcttttactaaaagcaagtttcttccatttgaagaaacttttcttcttc |
114 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
56165459 |
aaattcagtttcagcttcatgttgttcaacattctccatctcgccaccaatgcttttactaaaagcaagtttcttccatttaaagaaacctttcttcttc |
56165558 |
T |
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| Q |
115 |
tcagccatcttgtccatctgtgcttgcatgacattgcactgactctgcagcctgtaaacatcttccttcag |
185 |
Q |
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||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
56165559 |
tcaaccatcttttccatatgtgcttgcatgacattgcactgactttgcagcctgtaaacatcttccttcag |
56165629 |
T |
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