View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_6 (Length: 550)
Name: NF1545_high_6
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Complemental strand, 13482365 - 13481830
Alignment:
| Q |
1 |
aaattgtggggttagtctattgacgctcatatgatatagatagattgcaaataagnnnnnnn-cacaaatatttgatttctcttttatgtcggaatcgtg |
99 |
Q |
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| T |
13482365 |
aaattgtggggttagcctattgaagttcatatgatatagatagattgcaaataagaaaaaaaacacaaatatttgctttctcttttatgtaggactcata |
13482266 |
T |
|
| Q |
100 |
atcaagccaaccattcaatattaaggaggatccacataaacaaaaac--aataaatattggagggcactgcaaattaataggtactatatagcacactat |
197 |
Q |
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| T |
13482265 |
atcaaggcaacaattaaatattagggaggatccacataaacaaaaaataaataaatattgtagggcactgcaaattaataggtactatatagcacactat |
13482166 |
T |
|
| Q |
198 |
ggaatattgagttagagtaatattttagaaattagaaaattgattagcacattatatcaacaaaggagaatgata-taattaagttatatgacagaacat |
296 |
Q |
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| T |
13482165 |
ggaatattgagttagagtaatattttagaaattagaaaattgattagcatattatatcaacaaaggagaatgataataattaagttatatgacaaaacat |
13482066 |
T |
|
| Q |
297 |
tgatatggtcttaattttcccatctgttacattacatatatgtgttctttttaaagccaatgtaaacaccaatacataatttaattataactaacatata |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13482065 |
tgatatggtcttaattttcccatctgttacattacatatatgtgttctttttaaagccaatgtaaacaccaatacataatttaattataactaacatata |
13481966 |
T |
|
| Q |
397 |
cctattaattaatttcttaattcctaagtttctagaaaaagatctaccttgaatcttgatcctccctcaaactagggcaaagcactatattgctgttgca |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13481965 |
cctattaattaatttcttaattcctaagtttctagaaaaagatctaccttgaatcttgatcctccctcaaactagggcaaagcactatattgctgttgca |
13481866 |
T |
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| Q |
497 |
catcattccaatcatgaacaccaccaccattccagt |
532 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
13481865 |
catcattccaaccatgaacaccaccaccattccagt |
13481830 |
T |
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