View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_64 (Length: 203)
Name: NF1545_high_64
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-106
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 40061345 - 40061542
Alignment:
| Q |
1 |
ctggaaaattccctgcattgagtacaattttgccacaaccactattttaggcactaactagattaggtctcaacagtcttttactatttaaaacgcaggc |
100 |
Q |
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| T |
40061345 |
ctggaaaattccctgcattgagtacaattttgccacaaccactattttaggcactaactagattaggtctcaacagtcttttactatttaaaacgcaggc |
40061444 |
T |
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| Q |
101 |
ggcagtttataagacaggatctgtatgtgctgcctttctcgccaacgtggacactaaaagtgataaaactgtaaatttcagtggcaattcatctcact |
198 |
Q |
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| T |
40061445 |
ggcagtttataagacaggatctgtatgtgctgcctttctcgccaacgtggacactaaaagtgataaaactgtaaatttcagtggcaattcatatcact |
40061542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 40079491 - 40079688
Alignment:
| Q |
1 |
ctggaaaattccctgcattgagtacaattttgccacaaccactattttaggcactaactagattaggtctcaacagtcttttactatttaaaacgcaggc |
100 |
Q |
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|||||||||||||| |||||||| ||||||| ||||| |||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |
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| T |
40079491 |
ctggaaaattccctccattgagtgcaatttttccacagccactattttcggcactaactagattagttcttaacagtcttttactatttaaaccgcaggc |
40079590 |
T |
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| Q |
101 |
ggcagtttataagacaggatctgtatgtgctgcctttctcgccaacgtggacactaaaagtgataaaactgtaaatttcagtggcaattcatctcact |
198 |
Q |
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| T |
40079591 |
ggcagtttataagacaggatctgtatgtgctgcctttctcgccaacgtggatactaaaaatgataaaaccgtaaatttcagtggcaattcatatcact |
40079688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 40087268 - 40087391
Alignment:
| Q |
75 |
agtcttttactatttaaaacgcaggcggcagtttataagacaggatctgtatgtgctgcctttctcgccaacgtggacactaaaagtgataaaactgtaa |
174 |
Q |
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|||||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||| ||||||||| |||| |
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| T |
40087268 |
agtcttttactaataaaaccgcaggcggccgtttataagacaggatctgtatgtgctgcctttctcgccaatgtggacgccaaatctgataaaaccgtaa |
40087367 |
T |
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| Q |
175 |
atttcagtggcaattcatctcact |
198 |
Q |
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| T |
40087368 |
atttcagtggcaattcatatcact |
40087391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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