View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_high_9 (Length: 524)
Name: NF1545_high_9
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 40060861 - 40061368
Alignment:
| Q |
19 |
cgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgtccttcagcctacatactaaatatatgatgt |
118 |
Q |
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| T |
40060861 |
cgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatgtccttcagcctacatactaaatatatgttgt |
40060960 |
T |
|
| Q |
119 |
tcatgttgtagccatcacaaa-tgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaa |
217 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40060961 |
tcatgttgtagccatcacaaaatgtaccaccggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagagaa |
40061060 |
T |
|
| Q |
218 |
attacactggacaattgtgtttt--------------ttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagat |
303 |
Q |
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| T |
40061061 |
attacactggacaattgtgttttttaatatatattttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagat |
40061160 |
T |
|
| Q |
304 |
ttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattg |
403 |
Q |
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| T |
40061161 |
ttgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacctaagattacttctcttggtccaaacctagaggtagaggcggtttatattg |
40061260 |
T |
|
| Q |
404 |
aaatttttgcccgtttatcttatttcgcgtctttggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgc |
503 |
Q |
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| T |
40061261 |
aaatttttgcccgtttatcttatttcgcgtcttaggatagaatttattttgtaactaaaactcatccagtttgtcaatctttctctggaaaattccctgc |
40061360 |
T |
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| Q |
504 |
attgagta |
511 |
Q |
| |
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|||||||| |
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| T |
40061361 |
attgagta |
40061368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 40086760 - 40087228
Alignment:
| Q |
19 |
cgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatg--tccttcagcctacatact-aaatatatga |
115 |
Q |
| |
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|||||||| || |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||| | || | |||| ||| |
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| T |
40086760 |
cgaagtactggaggaccattcattgcaacaagttatgattttgatgcaccgattgatgagtatggtatgactccttcaaccttcttattgaaatctat-- |
40086857 |
T |
|
| Q |
116 |
tgttcatgttgtagccatcacaaatgtaccactggtaatacatcgaagaagataaattaataatatcacatgcatagtttatttcttatatgcacaagag |
215 |
Q |
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| T |
40086858 |
tgttcatgttgtagccgtcacaaatacaacactggtaatacatcgaagaagataaattgataatatcacatggatagtttatttcttatatgtagaagag |
40086957 |
T |
|
| Q |
216 |
aaattacactggacaattgtgttttttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggcc |
315 |
Q |
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| T |
40086958 |
aaattacactggacgattggattttttaatatcttcgctacatgctgcaggagttattaggcagccgaagtggggtcatcttaaagatgtgcacaaggcc |
40087057 |
T |
|
| Q |
316 |
gtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattgaaatttttgccc |
415 |
Q |
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| T |
40087058 |
ataaagctttgtgaagaagcattaatagccgcagaacccaagattacttatcttggtccaaacctagaggtatagatggtttatattgaaatttttgttc |
40087157 |
T |
|
| Q |
416 |
gttt-----atcttatttcgcgtctttggatagaatttattttgtaactaaaactcatccagtttgtcaat |
481 |
Q |
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|||| |||||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
40087158 |
gtttgaaacatcttattccgcgtcttaggatataatttattttgtaactaaaactcatctggtttgtcaat |
40087228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 412
Target Start/End: Original strand, 40078987 - 40079393
Alignment:
| Q |
19 |
cgaagtaccggcggaccattcattgctacaagttacgattttgatgcaccgattgatgaatatggtatg--tccttcagcctacatactaaatatatgat |
116 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||| || |||| ||| |||| | ||||| | |
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| T |
40078987 |
cgaagtaccggcggacctttcattgctacaagttatgattatgatgcaccgattgatgagtatggtatgactctttcaaccttaatacgag-tatatttt |
40079085 |
T |
|
| Q |
117 |
gttcatgttgtagccatcacaaatgtaccactggtaatacatcg-------aagaagataaattaataatatcacatgcatagtttatttcttatatgca |
209 |
Q |
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| T |
40079086 |
gttcatgttgtagccatcgcaaatgcaccactggtaatacctcggtcctcgaagaagataaattaataatattacacgcatagttattttcttttattta |
40079185 |
T |
|
| Q |
210 |
caagagaaattacactggacaatt----gtgttt-tttaatatatttgctatatactgcaggaattattaggcagccgaagtggggtcatcttaaagatt |
304 |
Q |
| |
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||||||||||||||||||||||| |||| | |||||||| | | ||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40079186 |
gaagagaaattacactggacaattttctgtgtgtgtttaatatctctactatacgctgcaggaattattaggcagcaaaagtggggtcatcttaaagatg |
40079285 |
T |
|
| Q |
305 |
tgcacaaggccgtaaagctttgtgaggaagcgttaatagctacagaacccaagattacttctcttggtccaaacctagaggtagaggcggtttatattga |
404 |
Q |
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| ||||||||| ||||||||||||| ||||| |||||||||| || ||||||||| | |||||||||| ||||||||||||| ||| ||| | |||||| |
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| T |
40079286 |
tacacaaggccataaagctttgtgaagaagcactaatagctactgatcccaagatttcatctcttggtcaaaacctagaggtataggtggtatgtattga |
40079385 |
T |
|
| Q |
405 |
aatttttg |
412 |
Q |
| |
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|||||||| |
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| T |
40079386 |
aatttttg |
40079393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 344
Target Start/End: Complemental strand, 22014313 - 22014230
Alignment:
| Q |
261 |
tgcaggaattattaggcagccgaagtggggtcatcttaaagatttgcacaaggccgtaaagctttgtgaggaagcgttaatagc |
344 |
Q |
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||||||| |||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| |
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| T |
22014313 |
tgcaggagatattagacagcccaaatggggtcatcttaaagatttgcacaaggccataaagctttgtgaagaagcattgatagc |
22014230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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