View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1545_low_14 (Length: 499)
Name: NF1545_low_14
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_14 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] chr7 (11 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 18 - 499
Target Start/End: Original strand, 29156885 - 29157367
Alignment:
| Q |
18 |
attgaggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctatta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29156885 |
attgaggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgtctccctgtgcttttgatgaaatgtcatctatta |
29156984 |
T |
|
| Q |
118 |
agccaccatctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29156985 |
agccaccatctttatgtatattgaaagattccttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaacatttggagttga |
29157084 |
T |
|
| Q |
218 |
agagccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29157085 |
agagccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgctgacttgaaaaattgtcaattgttgccattgcac |
29157184 |
T |
|
| Q |
318 |
ctttctgatcacaacgatacactaatattggctaataatcaa-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaacta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
29157185 |
ctttctgatcacaacgatacactaatattggctaataatcaagaacaacgggcaattctatataatttgagggataatacagcaaagaggactagaatta |
29157284 |
T |
|
| Q |
417 |
tcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29157285 |
tcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgt |
29157367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 22 - 497
Target Start/End: Original strand, 2595848 - 2596324
Alignment:
| Q |
22 |
aggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||| ||| ||||| ||||| |||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
2595848 |
aggctaaggaatttgtcattgtttcactttatatgggaacggagtcgtacacgcagttgatgcctccctctggttttgatgaaatgtcatctattaagcc |
2595947 |
T |
|
| Q |
122 |
accatctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagag |
221 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
2595948 |
gccatctttatgtatattgaaagactccttgtgtttttctcatgattacagaagaactgaattcattatatggcagatgaagattattggagttgaagag |
2596047 |
T |
|
| Q |
222 |
ccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcaccttt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2596048 |
ccatggactcaactccttaaaattagttaccaaaatcttcggactagatttcatgattttgctgacttgaaaaattgtcaattgttgccattgcaccttt |
2596147 |
T |
|
| Q |
322 |
ctgatcacaacgatacactaatattggctaataatcaa-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaactatcga |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
2596148 |
ctgatcacaacgatacactaatattggctaataatcaagaacaacgagcaattctatataatttgaggaataatacagcaaagcggactagaattatcga |
2596247 |
T |
|
| Q |
421 |
tccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacattt |
497 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2596248 |
tgaaatacaatggttctctgccaaggtttatgtcgaaagtttggtttctgacatttagaaagcacgtcaagacattt |
2596324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 25 - 499
Target Start/End: Original strand, 2588776 - 2589251
Alignment:
| Q |
25 |
ctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagccacc |
124 |
Q |
| |
|
|||| |||||||| |||||||||||||| || ||||| |||||||| ||||||||||||||||||| ||||||||||||||||| | ||||||| | |
|
|
| T |
2588776 |
ctaatgaatttgttgttgtttcacttgatcagggcacagaatcatacacgcagttgatgcctccctgtggttttgatgaaatgtcatatgttaagccggc |
2588875 |
T |
|
| Q |
125 |
atctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagagcca |
224 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||| | | ||||| ||||||||| ||||||||||| | || ||||||||||||||||| |
|
|
| T |
2588876 |
atctttatgtatattgaaagactccttgtgtttttctcatgataactggagaactgaattcattgtatggcagatgaagatcattggagttgaagagcca |
2588975 |
T |
|
| Q |
225 |
tggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcacctttctg |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2588976 |
tggactcaactccttaaaattagctaccaaaatcttcgaactagatttcatgattttgatgacttggaaaattgtcaattgttgccattgcacctttctg |
2589075 |
T |
|
| Q |
325 |
atcacaacgatacactaatattggctaataatcaa-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaactatcgatcc |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||| ||||||||||||||||||| |||| || |
|
|
| T |
2589076 |
atcacaacgatacactaatattggctaataatcaagaacaacgagcaattctacataatttgaggaataaaacagcaaagcggactagaattatcaatga |
2589175 |
T |
|
| Q |
424 |
aatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgt |
499 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2589176 |
aatacaatggttctctaccaaggtttatgttgaaagtttggtttctgatatttagaaagcacgtcaagacatttgt |
2589251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 22 - 499
Target Start/End: Original strand, 2581159 - 2581637
Alignment:
| Q |
22 |
aggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc |
121 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||| ||| | |||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
2581159 |
aggctaatgaatttgttgttgtttcacttgatctggggacaaaatcatacacgcagttgatgcctccatgtggttttgatgaaatgtcatctgttaagcc |
2581258 |
T |
|
| Q |
122 |
accatctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagag |
221 |
Q |
| |
|
||||| |||||||||||||| || || |||||||||||||||||| |||||||| ||||| |||||||||||||| | || |||||||||| ||| |
|
|
| T |
2581259 |
gccatcattatgtatattgaaggactccttgtgtttttctcatgatgtcagaagaactgaattggttatatggcagatgaagatcattggagttgacgag |
2581358 |
T |
|
| Q |
222 |
ccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcaccttt |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2581359 |
tcatggactcaactccttaaaattagttaccaaattcttcgaactagatatcatgcttttgatgacttggaaaattgtcaattgttgcctttgcaccttt |
2581458 |
T |
|
| Q |
322 |
ctgatcacaacgatacactaatattggctaataatcaa-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaactatcga |
420 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||| | |
|
|
| T |
2581459 |
ctgatcacaatgatacactaatattggctaataatcaagaacaacgagcaattctatataatttgaggaataatacagcaaagcggactagaattatcca |
2581558 |
T |
|
| Q |
421 |
tccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgt |
499 |
Q |
| |
|
| |||| ||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2581559 |
tgaaatagaatggttctttgtcaaggtttatgttgaaagcttggtttctgacatttagaaagcacgtcaagacatttgt |
2581637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 25 - 340
Target Start/End: Original strand, 2576726 - 2577041
Alignment:
| Q |
25 |
ctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagccacc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||| || ||||||||||| ||||||| ||||||| || |
|
|
| T |
2576726 |
ctaaggaatttgtcattgtttcacttgatatgggaacaaagtcgcacacacagttgatgcctccctctggttttgatgaaacgtcatctgttaagccgcc |
2576825 |
T |
|
| Q |
125 |
atctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagagcca |
224 |
Q |
| |
|
|||| |||||||||| || || || |||||||||||||||||||| |||||||| |||||| |||||||||||||| | || ||||||||||||||||| |
|
|
| T |
2576826 |
atctgtatgtatattcaaggactccttgtgtttttctcatgattacagaagaactgaattcgttatatggcagatgaagatcattggagttgaagagcca |
2576925 |
T |
|
| Q |
225 |
tggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcacctttctg |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| || |||| |||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
2576926 |
tggactcaactccttaaaattagttaccaaaatcttcagacaagatatcatgattttgctgacttgaaaaattttcagttgttgccattgcacctttctg |
2577025 |
T |
|
| Q |
325 |
atcacaacgatacact |
340 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
2577026 |
atcacagcgatacact |
2577041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 2584824 - 2584869
Alignment:
| Q |
424 |
aatacaatggttctctgccaaggtttttgttgaaagcttggtttct |
469 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||| ||||||||| |
|
|
| T |
2584824 |
aatacaatggttctctgtcaaggcttatgttgaaagtttggtttct |
2584869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 14514925 - 14514969
Alignment:
| Q |
206 |
atttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
14514925 |
atttggagttgaagattcttggactcaattccttaaaattagtta |
14514969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 59 - 499
Target Start/End: Complemental strand, 21642874 - 21642433
Alignment:
| Q |
59 |
aacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagccaccatctttatgtatattgaaagattcgttgtgtttt |
158 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |
|
|
| T |
21642874 |
aacagagttgtacacgcagttgatgcctccctttggtttggatgaaatgtcatctattaagctgccatctttatgtatattgaaagactccttgtgtttt |
21642775 |
T |
|
| Q |
159 |
tctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactc |
258 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||| ||||| ||| |||||||||| ||||||| |||||| |||||||||||||||| ||||||| || |
|
|
| T |
21642774 |
tctcatgattacaaaagaactgaattcattatatggaagatgaaaacatttggagttaaagagccgtggacttaactccttaaaattagctaccaaaatc |
21642675 |
T |
|
| Q |
259 |
ttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcacctttctgatcacaacgatacactaatattggctaataatca |
358 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
21642674 |
ttcggactagatatcatgattttgctgacttggaaaaatgtcaattgttgccattgcacctttcggatcacaacgatacactaatattggctaataatca |
21642575 |
T |
|
| Q |
359 |
a-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaa |
457 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
21642574 |
agaacaacgagcaattctatataatttgaggaataatacagcaaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaa |
21642475 |
T |
|
| Q |
458 |
agcttggtttctatcatttagaaagcacgtcaagacatttgt |
499 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21642474 |
agtttggtttctgacatttagaaagcacgtcaagacatttgt |
21642433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 59 - 497
Target Start/End: Complemental strand, 21621204 - 21620765
Alignment:
| Q |
59 |
aacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagccaccatctttatgtatattgaaagattcgttgtgtttt |
158 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || |||||||||||||||||||||||||| |||| |||||||||||||||||| || || |||||| |
|
|
| T |
21621204 |
aacagagttgtacacgcagttgatgcctccctctggttttgatgaaatgtcatctattaagctgccatatttatgtatattgaaagactccttctgtttt |
21621105 |
T |
|
| Q |
159 |
tctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactc |
258 |
Q |
| |
|
||||||||||| | |||||| ||||||||||||||| ||||| ||| |||||||||||||||| | |||||| |||||||||||||||| ||||||| || |
|
|
| T |
21621104 |
tctcatgattacaaaagaactgaattcattatatggaagatgaaaacatttggagttgaagaggcgtggacttaactccttaaaattagctaccaaaatc |
21621005 |
T |
|
| Q |
259 |
ttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcacctttctgatcacaacgatacactaatattggctaataatca |
358 |
Q |
| |
|
|||| ||||||| |||||||||||| |||||| |||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
21621004 |
ttcggactagatatcatgattttgctgacttggaaaaatgtcaattgttgccattgcacctttcggagcacaacgatacactaatattggctaataatca |
21620905 |
T |
|
| Q |
359 |
a-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaa |
457 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
21620904 |
agaacaacgagcaattctatataatttgaggaataatacagcaaagcggactagaattatcgatgaaatacaatggttctctgccaaggtttatgttgaa |
21620805 |
T |
|
| Q |
458 |
agcttggtttctatcatttagaaagcacgtcaagacattt |
497 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21620804 |
agtttggtttctgacatttagaaagcacgtcaagacattt |
21620765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 261
Target Start/End: Original strand, 3625739 - 3625814
Alignment:
| Q |
186 |
attatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactcttc |
261 |
Q |
| |
|
||||||||||| ||| | | |||||| ||||||||| | ||||||||| | |||||||||||||| |||| ||||| |
|
|
| T |
3625739 |
attatatggcaaatgaagaaatttggggttgaagagtcttggactcaatttcttaaaattagttatcaaaatcttc |
3625814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 22 - 499
Target Start/End: Original strand, 30398965 - 30399442
Alignment:
| Q |
22 |
aggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||| || |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
30398965 |
aggctaaggaatttgtcattgtttcacttgatatgggaacagagttgtacatgcaaatgatgcctccctctggttttgatgaaatgtcatctattaagct |
30399064 |
T |
|
| Q |
122 |
accatctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagag |
221 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||| || ||||||| | |||||| |||||||||||||| ||||| ||| |||| ||||||||||| |
|
|
| T |
30399065 |
gccatctttatgtatattgaaagactccttgtgtttt-ctaatgattacaaaagaactaaattcattatatggaagatgaaaacatttagagttgaagag |
30399163 |
T |
|
| Q |
222 |
ccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcaccttt |
321 |
Q |
| |
|
|| ||||||||||||||||||||||| | ||||| |||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30399164 |
ccgtggactcaactccttaaaattagctgccaaaatcttcggactagatatcatgattttgctgacttggaaaattgtcaattgttgccattgcaccttt |
30399263 |
T |
|
| Q |
322 |
ctgatcacaacgatacactaatattggctaataatcaa-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaactatcga |
420 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||| | |||||| |||||| |
|
|
| T |
30399264 |
cggatcacaactatacactaatattggctaataatcaagaacaacgagcaattctatataatttgaggaataatacagtaaagttggctagaattatcga |
30399363 |
T |
|
| Q |
421 |
tccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgt |
499 |
Q |
| |
|
| |||||||||||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30399364 |
tgaaatacaatggttctctaccaaggtttatgttgaaagtttggtttctgacatttagaaagcacgtcaagacatttgt |
30399442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 6921395 - 6921351
Alignment:
| Q |
206 |
atttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
6921395 |
atttggagttgaagaatcttggactcaattccttaaaattagtta |
6921351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Complemental strand, 6947925 - 6947881
Alignment:
| Q |
206 |
atttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
6947925 |
atttggagttgaagaatcttggactcaattccttaaaattagtta |
6947881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 20770675 - 20770719
Alignment:
| Q |
206 |
atttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
||||||| |||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
20770675 |
atttggaattgaagagtcatggattcaattccttaaaattagtta |
20770719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 499
Target Start/End: Original strand, 46769215 - 46769690
Alignment:
| Q |
22 |
aggctaaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagcc |
121 |
Q |
| |
|
||||||||||||||| |||||||||||| || ||||||| | |||| ||| | |||||||||||| ||| |||||||||||||||| | ||||||| |
|
|
| T |
46769215 |
aggctaaggaatttgcgattgtttcactttatacggaaacaaaatcattcacgcggttgatgcctcctcgtggttttgatgaaatgtcaaatgttaagcc |
46769314 |
T |
|
| Q |
122 |
accatctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagag |
221 |
Q |
| |
|
||| ||||||||||||| | || ||||| ||||||||||||| | |||||| ||||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
46769315 |
g---tctgtatgtatattgaagggctccttgtgcttttctcatgatttcaaaagaactgaattcattatgtggcagatgaaaatattcggagttgaagag |
46769411 |
T |
|
| Q |
222 |
ccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcaccttt |
321 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||| |||||| || ||||||| |||| |||||||||||||| |
|
|
| T |
46769412 |
ccttggactcaacttcttaaaattagttaccaaaatcttcggactagatttcatgattttgctgacttggaatattgtcagttgtcgccattgcaccttt |
46769511 |
T |
|
| Q |
322 |
ctgatcacaacgatacactaatattggctaataatcaa-aacaacgggcaattctatataatttgagggataatacagcaaagcggactagaactatcga |
420 |
Q |
| |
|
|||||| | ||||||| ||||||||| || |||||| |||| || |||||||||||||||||||||||||||||||||||| | |||| || |||| | |
|
|
| T |
46769512 |
atgatcaaagtgatacacgaatattggccaacaatcaagaacagcgagcaattctatataatttgagggataatacagcaaagagaactaaaattatcaa |
46769611 |
T |
|
| Q |
421 |
tccaatacaatggttctctgccaaggtttttgttgaaagcttggtttctatcatttagaaagcacgtcaagacatttgt |
499 |
Q |
| |
|
| |||||| ||||||||||||||||||| |||||||| || |||||| ||||||||||||| |||||||||||||| |
|
|
| T |
46769612 |
tgaaatacattggttctctgccaaggtttacgttgaaagttttgtttcttacatttagaaagcatgtcaagacatttgt |
46769690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 31 - 352
Target Start/End: Original strand, 36260106 - 36260424
Alignment:
| Q |
31 |
aatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagccaccatcttt |
130 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| |||||||| ||||||||||||| || | |||||||||||||||| ||||| || ||||| | |
|
|
| T |
36260106 |
aatttgtgattgtttcacttgatctggaaacagagacatacacaaagttgatgcctccttgcggttttgatgaaatgtcacctattgag---ccatcggt |
36260202 |
T |
|
| Q |
131 |
atgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagagccatggact |
230 |
Q |
| |
|
|||||||||| |||| | || |||||| ||||||| | | ||| || || |||||||| |||||||| |||||||||||||||| | |||| | |
|
|
| T |
36260203 |
atgtatattgttggattgtctttgcttttctaatgattacaagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtcttggatt |
36260302 |
T |
|
| Q |
231 |
caactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaattgtcaattgttgccattgcacctttctgatcaca |
330 |
Q |
| |
|
||||| |||||||||| || |||| |||||| | || | || || |||| |||||| || || | ||| |||||||||||||||||||||||| |
|
|
| T |
36260303 |
caacttattaaaattagctatcaaaatcttcggagtatacatcgtggctttgttgacttggaactttctaaatggttgccattgcacctttctgatcatg |
36260402 |
T |
|
| Q |
331 |
acgatacactaatattggctaa |
352 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
36260403 |
gtgatacactaatattggctaa |
36260424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 26 - 247
Target Start/End: Original strand, 36262901 - 36263119
Alignment:
| Q |
26 |
taaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagccacca |
125 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| | | ||||||| ||||||||||| |||||||| |||| |||||||||||||||| || || || ||| |
|
|
| T |
36262901 |
taaggactttgtgattgtttcatttgatctaggaacagagacatacacacagccaatgcctccgtgtggttttgatgaaatgtcacctgttgag---cca |
36262997 |
T |
|
| Q |
126 |
tctttatgtatattgaaagattcgttgtgtttttctcatgattatagaagaaccgaattcattatatggcagatggaaatatttggagttgaagagccat |
225 |
Q |
| |
|
|| |||||||||||| || | | || |||||| |||| |||| | ||| || || |||||||| |||||||| |||||||||||||||| | | |
|
|
| T |
36262998 |
tcaatatgtatattgatggactgtctttgcttttctaatgactataagaaaactgattttgttatatggaagatggaagaatttggagttgaagagtctt |
36263097 |
T |
|
| Q |
226 |
ggactcaactccttaaaattag |
247 |
Q |
| |
|
||||||||||| ||||| |||| |
|
|
| T |
36263098 |
ggactcaactcattaaagttag |
36263119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 19604528 - 19604462
Alignment:
| Q |
186 |
attatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttacc |
252 |
Q |
| |
|
||||||||||||||| | ||||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
19604528 |
attatatggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagttacc |
19604462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 36255372 - 36255446
Alignment:
| Q |
187 |
ttatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactcttc |
261 |
Q |
| |
|
|||||||| | ||||||| |||||||||||||||| | |||||||||||| ||||| |||| || |||| ||||| |
|
|
| T |
36255372 |
ttatatggaaaatggaaaaatttggagttgaagagtcttggactcaactcattaaagttagctatcaaaatcttc |
36255446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 29106823 - 29106888
Alignment:
| Q |
190 |
tatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaa |
255 |
Q |
| |
|
||||||||||| | | |||||| ||||||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
29106823 |
tatggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagttaccaaa |
29106888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 36255214 - 36255294
Alignment:
| Q |
26 |
taaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaat |
106 |
Q |
| |
|
|||||| ||||| |||||| | |||||| ||| ||||||| ||||||| ||| |||||||||| ||| |||||||||||| |
|
|
| T |
36255214 |
taaggactttgtgattgttgcgcttgatctgggaacagagacatacacgcagctgatgcctccgcgtggttttgatgaaat |
36255294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 660911 - 660848
Alignment:
| Q |
187 |
ttatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
660911 |
ttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagtta |
660848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 469
Target Start/End: Original strand, 36260477 - 36260578
Alignment:
| Q |
368 |
gcaattctatataatttgagggataatacagcaaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggttt |
467 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||| || ||||||| || |||| ||| ||||||||| || ||||| || ||||||||||||||||| |
|
|
| T |
36260477 |
gcaattctatataacttgagagataatatagcggtgcaaactagaattaccgataagataaaatggttctttgtcaaggcttatgttgaaagcttggttt |
36260576 |
T |
|
| Q |
468 |
ct |
469 |
Q |
| |
|
|| |
|
|
| T |
36260577 |
ct |
36260578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 18997660 - 18997588
Alignment:
| Q |
189 |
atatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactcttc |
261 |
Q |
| |
|
|||||||||||| | |||||||||||| || | |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
18997660 |
atatggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagttacctaactcttc |
18997588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 20352120 - 20352164
Alignment:
| Q |
206 |
atttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
20352120 |
atttggagttgaagattcatggactcaactttttaaaattagtta |
20352164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 187 - 469
Target Start/End: Original strand, 35767024 - 35767307
Alignment:
| Q |
187 |
ttatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcaga |
286 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| | |||| ||||||||||||||||| || |||| ||||| | || | | ||| || || |
|
|
| T |
35767024 |
ttatatggaagatggaagaatttggagttgaagagtcttggattcaactccttaaaattaactatcaaaatcttctgagtatgtattttgacgtttatga |
35767123 |
T |
|
| Q |
287 |
cttgaaaaattgtcaattgttgccattgcacctttctgatcacaacgatacactaatattggctaataatcaa-aacaacgggcaattctatataatttg |
385 |
Q |
| |
|
|||| ||||| ||| || |||||||| |||||||||||||| |||||||||||||||||||| || || || ||| |||||||||||||||||| |
|
|
| T |
35767124 |
cttgcgaaattctcagttcttgccattacacctttctgatcatggtgatacactaatattggctaacaaggaagaagaacaagcaattctatataatttg |
35767223 |
T |
|
| Q |
386 |
agggataatacagcaaagcggactagaactatcgatccaatacaatggttctctgccaaggtttttgttgaaagcttggtttct |
469 |
Q |
| |
|
|| |||||| |||| ||| |||||||||| ||| |||||| ||||||||| ||||||||| ||| ||||||||||||||| |
|
|
| T |
35767224 |
agagataatggagcagtgcgaactagaactactgatagaatacactggttctctaccaaggtttatgtcgaaagcttggtttct |
35767307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 19358985 - 19359082
Alignment:
| Q |
26 |
taaggaatttgtcattgtttcacttgatgtggaaacagagtcatacacacagttgatgcctccctgtgcttttgatgaaatgtcatctattaagccac |
123 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || |||| || |||||||| ||||||||||||| |||| |||| |||| |||||| ||||||||||| |
|
|
| T |
19358985 |
taagaaatttgtgattgtttcacttgattagggaacaaagacatacacaaagttgatgcctccttgtggtttttatgacatgtcacttattaagccac |
19359082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 3561033 - 3560959
Alignment:
| Q |
176 |
aaccgaattcattatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| |||||| ||||||||| | ||||||||| | |||||||||||||| |
|
|
| T |
3561033 |
aaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggactcaatttcttaaaattagtta |
3560959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 352
Target Start/End: Original strand, 19359152 - 19359308
Alignment:
| Q |
196 |
agatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactcttcgaactagatttcatgattttgcagacttgaaaaa |
295 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||||||||| |||||||||| || |||| ||||| | || | || ||| |||| ||||||||| |
|
|
| T |
19359152 |
agatggaagaatttggagttgaagagtcttggactcaacttattaaaattaggtatcaaaatcttcagagtatacatcgtgactttgttgacttgaaact |
19359251 |
T |
|
| Q |
296 |
ttgtcaattgttgccattgcacctttctgatcacaacgatacactaatattggctaa |
352 |
Q |
| |
|
|| | ||| ||| ||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
19359252 |
ttctaaatggttaccatttcacctttctgatcatggtgatacactcatattggctaa |
19359308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 53774865 - 53774909
Alignment:
| Q |
206 |
atttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
|||||||||||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
53774865 |
atttggagttgaagagtcttggactcaattccttaaaattagtta |
53774909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 3565739 - 3565813
Alignment:
| Q |
176 |
aaccgaattcattatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagtta |
250 |
Q |
| |
|
|||||| || ||||||||||||||| | |||||| ||||||||| | ||||||||| | |||||||||||||| |
|
|
| T |
3565739 |
aaccgattttattatatggcagatgaaggaatttggggttgaagagtcttggactcaatttcttaaaattagtta |
3565813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 19361448 - 19361522
Alignment:
| Q |
187 |
ttatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttaccaaactcttc |
261 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||| |||||||||||| |||||||||| || |||| ||||| |
|
|
| T |
19361448 |
ttatatggaagatggaataatttgaagttgaagagttttggactcaactcattaaaattaggtatcaaaatcttc |
19361522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Original strand, 19359417 - 19359462
Alignment:
| Q |
424 |
aatacaatggttctctgccaaggtttttgttgaaagcttggtttct |
469 |
Q |
| |
|
|||| |||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
19359417 |
aataaaatggttctctgtcaaggcttatgttgaaagcttggtttct |
19359462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 4015029 - 4014963
Alignment:
| Q |
187 |
ttatatggcagatggaaatatttggagttgaagagccatggactcaactccttaaaattagttacca |
253 |
Q |
| |
|
|||||||||||||| | | |||||| |||||||| | ||||||||| |||||||| |||||||||| |
|
|
| T |
4015029 |
ttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttacca |
4014963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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