View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_16 (Length: 492)
Name: NF1545_low_16
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 12 - 474
Target Start/End: Complemental strand, 45595868 - 45595406
Alignment:
| Q |
12 |
atgaaccaaacttacagagagaatactacttattggaaaagaaagcacatcaatccaaaagaagagagggccaaagggtattgtcccttaactccaaagg |
111 |
Q |
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| T |
45595868 |
atgaaccaaacttacagagagaatactacttattggaaaagaaagcacatcgatccaaaagaagagagggccaaagggtattgtcccttaactccaaagg |
45595769 |
T |
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| Q |
112 |
aagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaatt |
211 |
Q |
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| T |
45595768 |
aagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgctgcaggggagatatatgggggtgaatcccatatgactgaatt |
45595669 |
T |
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| Q |
212 |
gcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactgg |
311 |
Q |
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| T |
45595668 |
gcgatcacgctatccctttttaatgagcaaggttagaaattacaagactttattgttgtttcttggtgaatgaagattgataaagcattgtttgaactgg |
45595569 |
T |
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| Q |
312 |
tttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttg |
411 |
Q |
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| T |
45595568 |
tttcttatttaatctacatgtaactaatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttg |
45595469 |
T |
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| Q |
412 |
actatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgag |
474 |
Q |
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| T |
45595468 |
actatattgtatctgttgaaagtgatgtatttgtacattcttaccctggcaacatggcgcgag |
45595406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 27151508 - 27151335
Alignment:
| Q |
71 |
agaagagagggccaaagggtattgtcccttaactccaaaggaagttggaattttccttagtgctcttggataccctgcaaagactccaatatatattgct |
170 |
Q |
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| T |
27151508 |
agaacagaggtccaaagggttttgccccttaacaccaaaggaagttggaatttttcttactgctcttggatatccatcaaagacgccgatatatattgct |
27151409 |
T |
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| Q |
171 |
gcaggggagatatatgggggtgaatcccatatgactgaattgcgatcacgctatccctttttaatgagcaaggt |
244 |
Q |
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| T |
27151408 |
gctggagagatttatgggggtgagtcccatatggctgaactgcgatcccgttatccattgttaatgagcaaggt |
27151335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 336 - 469
Target Start/End: Complemental strand, 27149117 - 27148984
Alignment:
| Q |
336 |
taatatcaggaaaagttggcatctattgaagagcttgaaccattttctaatcatgcgtcgcaaatggctgctcttgactatattgtatctgttgaaagtg |
435 |
Q |
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| T |
27149117 |
taatttcaggaaacgttggcatccattgaggagcttgaacccttttttaatcatgcttctcaaatggctgctcttgactatattgtatctatcgagagtg |
27149018 |
T |
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| Q |
436 |
atgtatttgtacattcttaccctggcaacatggc |
469 |
Q |
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| T |
27149017 |
atgtatttataccctcttattctggaaacatggc |
27148984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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