View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_17 (Length: 491)
Name: NF1545_low_17
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 36126070 - 36126293
Alignment:
| Q |
17 |
aatttgaagcagatgcaaagtggtaaaaacatatttttcaaattgctgtaaaattgagcaatttaattatgatgtttattctagtataagattatgtcta |
116 |
Q |
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| T |
36126070 |
aatttgaagcagatgcaaagtggtaaaaacatatttttcaaattgctgtaaaattgagcaatttaattatgatgtttattctagtataagattatgtcta |
36126169 |
T |
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| Q |
117 |
aaaacggtgatgtcttttcgtaatttagagcttaccaaaggagacatgctatcaaactccttgacaacttcagtaaactttccaacatcttcttcatcaa |
216 |
Q |
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| T |
36126170 |
aaaacagtgatgtcttttcgtaatttagagcttaccaaaggagacatgctatcaaactccttgacaacttcagtaaactttccaacatcttcttcatcaa |
36126269 |
T |
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| Q |
217 |
ttgcagccgcaacatcctggccaa |
240 |
Q |
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| T |
36126270 |
ttgcagcagcaacatcctgaccaa |
36126293 |
T |
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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 467
Target Start/End: Original strand, 36126444 - 36126516
Alignment:
| Q |
395 |
aagcagtataccgccaaaagtctgtattcacgtgttcctgaaaatgtcggatccaaatcctgcaaaaacaaat |
467 |
Q |
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| T |
36126444 |
aagcaatataccgccagaagtctatattcacgcgttcctgaaaatgttggatccaactcctgtaaaaacaaat |
36126516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 15430 - 15524
Alignment:
| Q |
124 |
tgatgtcttttcgtaatttagagcttaccaaaggagacatgctatcaaactccttgacaacttcagtaaactttccaacatcttcttcatcaatt |
218 |
Q |
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| T |
15430 |
tgatgtttattcgtaatttagagcttaccaaaagagacatgctatcaaactccttgacaacttgagtaaactttccaacatcttcttcatcaatt |
15524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 15362 - 15441
Alignment:
| Q |
17 |
aatttgaagcagatgcaaagtggtaaaaacatatttttcaaattgctgtaaaattgagcaatttaattatgatgtttattc |
97 |
Q |
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| T |
15362 |
aatttgaagcagatgcaaagtggtaaaaacatatttatcaaattgctgt-aaattgagcaatttaattatgatgtttattc |
15441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 464
Target Start/End: Original strand, 15628 - 15712
Alignment:
| Q |
383 |
atgaaatttcac---aagcagtataccgccaaaagtctgtattcacgtgttcctgaaaatgtcggatccaaatcctgcaaaaaca |
464 |
Q |
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| T |
15628 |
atgaaatttcactataagcaatataccgccagaagtctatattcacgtgttccggaaaatgttggatccagttcctgcaaaaaca |
15712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 32381257 - 32381346
Alignment:
| Q |
145 |
agcttaccaaaggagacatgctatcaaactccttgacaacttcagtaaactttccaacatcttcttcatcaattgcagccgcaacatcct |
234 |
Q |
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||||||||| ||| | ||||||||| || |||||||| || ||||||||||||||||||||||||||||||| ||| || |||||||||| |
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| T |
32381257 |
agcttaccagaggggtcatgctatcgaagtccttgacgacatcagtaaactttccaacatcttcttcatcaactgcggcagcaacatcct |
32381346 |
T |
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