View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1545_low_18 (Length: 467)
Name: NF1545_low_18
Description: NF1545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1545_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 103 - 460
Target Start/End: Original strand, 29485635 - 29485992
Alignment:
| Q |
103 |
catgttattggtagttgtgtggctaaaaaataatcaatctatatctatatagtagtaaatgttgtctgttaggccaaagcatataccatgtttctgattg |
202 |
Q |
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| T |
29485635 |
catgttattggtagttgtgtggctaaaaaataatcaatctatatccatatagtagtaaatgttgtctgttaggccaaagcatataccatgtttctgattg |
29485734 |
T |
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| Q |
203 |
tcgggctccttatttttagtttaggtatagaaaataccatgttactgatcattgtaccaataaaatatgctggaaaaagaaaaagaatgaagattaacag |
302 |
Q |
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| T |
29485735 |
tcgggctccttatttttagtttaggtatagaaaataccatgttattgatcattgtaccaataaaatatgctggaaaaagaagaagaatgaagattaacag |
29485834 |
T |
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| Q |
303 |
tgtaactgaatccaaatatgaatccaagccagacaaataatcttctactattagacaaaatttatttattaatcttcaccaactcccaaaacaaaaaatt |
402 |
Q |
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| T |
29485835 |
tgtaactgaatccaaatatgaatccaagccagacaaataatcttctactattagacaaaatttatttattaatcttcaccaactcccaaaacaaaaaatt |
29485934 |
T |
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| Q |
403 |
aatacaagctcaaagcttaatggaccgaaattgaagctcccatgctgaatgatgatgt |
460 |
Q |
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| T |
29485935 |
aatacaagctcaaagcttaatggaccgaaattgaagctcccatgctgactgatgatgt |
29485992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 29485521 - 29485618
Alignment:
| Q |
16 |
cctttgtcactgtgctcccaacaatttcaaccactaataattttaattgaattaaattattttactcttaatacatttgaagtacatcatgttattgg |
113 |
Q |
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| T |
29485521 |
cctttgtcactgtgctcccaacaatttcaaccactaattattttaattgaattaaattattttactcttaacacattagaagtacatcatgttattgg |
29485618 |
T |
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